RNAquarium Metadata Server
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contig_metadata

6 rows where bioproject = "PRJNA682774", tax_clade = "Amoebozoa" and tax_phylum = "Discosea"

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tax_superkingdom 1

tax_phylum 1

  • Discosea · 6 ✖

tax_clade 1

  • Amoebozoa · 6 ✖

bioproject 1

  • PRJNA682774 · 6 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5768320 5768320 PRJNA682774_P_NODE_645_length_541_cov_1.198718_g616_i0 PRJNA682774 645 541 1.198718 6.48506438 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 176 1.9e-52   NR XP_004337603.1 1257118 g616 i0 65 0.77634011090573 140 46 77.6 1 429 10 74 210 XP_004337603.1 ribosomal protein L23, putative [Acanthamoeba castellanii str. Neff] diamond 420 176 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
17242624 17242624 PRJNA682774_P_NODE_894_length_456_cov_1.402089_g865_i0 PRJNA682774 894 456 1.402089 6.39352584 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 173 1.27e-48   NR XP_004334355.1 1257118 g865 i0 54.4 0.967105263157895 147 64 94.7 2 452 21 336 482 XP_004334355.1 protein disulfideisomerase domain containing protein [Acanthamoeba castellanii str. Neff] diamond 441 173 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
29797711 29797711 PRJNA682774_P_NODE_4171_length_249_cov_0.886364_g4142_i0 PRJNA682774 4171 249 0.886364 2.20704636 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 103 5.21e-25   NR XP_004367664.1 1257118 g4142 i0 53.1 1.93975903614458 81 38 97.6 0 247 5 118 198 XP_004367664.1 phytanoylCoA dioxygenase [Acanthamoeba castellanii str. Neff] diamond 483 103 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
30050388 30050388 PRJNA682774_P_NODE_5431_length_242_cov_0.923077_g5402_i0 PRJNA682774 5431 242 0.923077 2.23384634 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 104 5.16e-24   NR XP_004332832.1 1257118 g5402 i0 64.6 1.97107438016529 79 28 97.9 0 3 239 469 547 XP_004332832.1 Prokumamolisin, putative [Acanthamoeba castellanii str. Neff] diamond 477 104 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
30208233 30208233 PRJNA682774_P_NODE_532_length_596_cov_3.422562_g504_i0 PRJNA682774 532 596 3.422562 20.39846952 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 45.8 0.0196   NR XP_004334245.1 1257118 g504 i0 32.1 0.785234899328859 156 83 70 9 555 139 4 153 XP_004334245.1 uncharacterized protein ACA1_031140 [Acanthamoeba castellanii str. Neff] diamond 468 45.8 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
32548518 32548518 PRJNA682774_P_NODE_3639_length_252_cov_0.871508_g3610_i0 PRJNA682774 3639 252 0.871508 2.19620016 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 127 6.45e-34   NR XP_004342212.1 1257118 g3610 i0 65.1 0.988095238095238 83 29 98.8 0 250 2 62 144 XP_004342212.1 ubiquitin interaction motif domain containing protein [Acanthamoeba castellanii str. Neff] diamond 249 127 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;