RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA682370" and tax_phylum = "Tubulinea"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Tubulinea · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA682370 · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3215156 3215156 PRJNA682370_S_NODE_24103_length_151_cov_1.198276_g23491_i0 PRJNA682370 24103 151 1.198276 1.80939676 Nolandella sp. ATCC PRA-27 498006 Tubulinea other_Eukaryota 99 1.56e-16   NTclustered gi|167859744|gb|EU273453.1| 498006 g23491 i0 84.158 4.8476821192053 101 16 67 0 1 101 663 563 Nolandella sp. ATCC PRA-27 clone 2 actin gene, partial cds blastn 732 99 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Hartmannellidae Nolandella Nolandella sp. ATCC PRA-27
27410072 27410072 PRJNA682370_S_NODE_10143_length_230_cov_1.282051_g9531_i0 PRJNA682370 10143 230 1.282051 2.9487173 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 82 1.03e-16   NR AFX73093.1 5778 g9531 i0 53.9 1.98260869565217 76 22 99.1 1 2 229 35 97 AFX73093.1 elongation factor 2 alpha, partial [Vermamoeba vermiformis] diamond 456 82.8 0.990338164251208 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;