RNAquarium Metadata Server
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contig_metadata

6 rows where bioproject = "PRJNA682370", tax_phylum = "Myxococcota" and tax_superkingdom = "Bacteria"

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analysis 2

tax_superkingdom 1

  • Bacteria · 6 ✖

tax_phylum 1

  • Myxococcota · 6 ✖

tax_kingdom 1

bioproject 1

  • PRJNA682370 · 6 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
10103229 10103229 PRJNA682370_S_NODE_11188_length_217_cov_1.752747_g10576_i0 PRJNA682370 11188 217 1.752747 3.80346099 Pseudomonadati 3379134 Bacteria Bacteria 69.4 1.9e-7   NTclustered gi|2869653495|gb|CP175551.1| 33 g10576 i0 93.478 4.16129032258065 46 3 21 0 169 214 6892199 6892244 Myxococcus fulvus strain KYC1117 chromosome, complete genome blastn 903 69.4 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Myxococcaceae Myxococcus Myxococcus fulvus
14693564 14693564 PRJNA682370_S_NODE_9512_length_239_cov_1.607843_g8900_i0 PRJNA682370 9512 239 1.607843 3.84274477 Pendulispora albinea 2741071 Bacteria Bacteria 54.7 0.006   NTclustered gi|2698035964|gb|CP089984.1| 2741071 g8900 i0 100 0.121338912133891 29 0 12 0 67 95 8621703 8621675 Pendulispora albinea strain MSr11954 chromosome, complete genome blastn 29 54.7 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Pendulisporaceae Pendulispora Pendulispora albinea
27524478 27524478 PRJNA682370_S_NODE_15963_length_179_cov_1.451389_g15351_i0 PRJNA682370 15963 179 1.451389 2.59798631 Polyangiaceae bacterium 2268199 Bacteria Bacteria 48.5 1.44e-4   NR HEX2736392.1 2268199 g15351 i0 37.9 0.972067039106145 58 30 88.8 3 2 160 398 454 HEX2736392.1 matrixin family metalloprotease [Polyangiaceae bacterium] diamond 174 48.5 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Polyangiaceae   Polyangiaceae bacterium
28345376 28345376 PRJNA682370_S_NODE_11306_length_216_cov_1.314917_g10694_i0 PRJNA682370 11306 216 1.314917 2.84022072 Kofleriaceae bacterium 2212474 Bacteria Bacteria 51.6 1.9e-5   NR HTJ44394.1 2212474 g10694 i0 46.7 2.31944444444444 60 31 83.3 1 36 215 394 452 HTJ44394.1 Glu/Leu/Phe/Val dehydrogenase [Kofleriaceae bacterium] diamond 501 51.6 1 Bacteria   Pseudomonadati Myxococcota   Haliangiales Kofleriaceae   Kofleriaceae bacterium
28755845 28755845 PRJNA682370_S_NODE_12727_length_201_cov_4.006024_g12115_i0 PRJNA682370 12727 201 4.006024 8.05210824 Deltaproteobacteria bacterium 2026735 Bacteria Bacteria 68.9 6.13e-13   NR MCP4669365.1 2026735 g12115 i0 51.6 1.70149253731343 64 29 94 2 1 189 67 129 MCP4669365.1 50S ribosomal protein L24 [Deltaproteobacteria bacterium] diamond 342 68.9 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
29198075 29198075 PRJNA682370_S_NODE_16149_length_178_cov_1.503497_g15537_i0 PRJNA682370 16149 178 1.503497 2.67622466 Labilithrix sp. 1971228 Bacteria Bacteria 71.2 6.79e-14   NR HVJ94850.1 1971228 g15537 i0 63 0.775280898876405 46 17 77.5 0 145 8 12 57 HVJ94850.1 hypothetical protein [Labilithrix sp.] diamond 138 71.2 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Labilitrichaceae Labilithrix Labilithrix sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;