contig_metadata
10 rows where bioproject = "PRJNA682370", tax_kingdom = "Metazoa" and tax_phylum = "Nematoda"
This data as json, CSV (advanced)
| Link | rowid ▼ | query | bioproject | node | length | coverage | rel_abundance | taxname_lca | taxid_lca | taxoncategory | taxoncategorysimple | bits | evalue | lowcoverage_flag | analysis_used | target | taxid | gene | allele | pident | sumperc_cov | alnlen | mismatch | qcov | gapopen | qstart | qend | tstart | tend | target_title | analysis | sumalnlen | maxbits | bits_percmax | tax_superkingdom | tax_clade | tax_kingdom | tax_phylum | tax_class | tax_order | tax_family | tax_genus | tax_species |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 8317593 | 8317593 | PRJNA682370_S_NODE_4747_length_367_cov_5.090361_g4135_i0 | PRJNA682370 | 4747 | 367 | 5.090361 | 18.68162487 | Caenorhabditis remanei | 31234 | Nematoda | Nematoda | 195 | 5.4699999999999995e-45 | NTclustered | gi|2445382034|ref|XM_003114158.2| | 31234 | g4135 | i0 | 78.689 | 17.8147138964578 | 305 | 55 | 82 | 9 | 54 | 353 | 357 | 58 | Caenorhabditis remanei uncharacterized protein (GCK72_018257), partial mRNA | blastn | 6538 | 195 | 1 | Eukaryota | Opisthokonta | Metazoa | Nematoda | Chromadorea | Rhabditida | Rhabditidae | Caenorhabditis | Caenorhabditis remanei | |
| 17242303 | 17242303 | PRJNA682370_S_NODE_23734_length_152_cov_1.017094_g23122_i0 | PRJNA682370 | 23734 | 152 | 1.017094 | 1.54598288 | Eukaryota | 2759 | unresolved_Eukaryota | other_Eukaryota | 93.6 | 6.71e-21 | NR | KAE9418232.1 | 6313 | g23122 | i0 | 83.7 | 13.5592105263158 | 49 | 8 | 96.7 | 0 | 147 | 1 | 198 | 246 | KAE9418232.1 hypothetical protein Angca_003480, partial [Angiostrongylus cantonensis] | diamond | 2061 | 94.4 | 0.991525423728813 | Eukaryota | Opisthokonta | Metazoa | Nematoda | Chromadorea | Rhabditida | Metastrongylidae | Angiostrongylus | Angiostrongylus cantonensis | |
| 18516533 | 18516533 | PRJNA682370_S_NODE_4195_length_394_cov_2.615599_g3584_i0 | PRJNA682370 | 4195 | 394 | 2.615599 | 10.30546006 | Strongyloides papillosus | 174720 | Nematoda | Nematoda | 58.4 | 8.1e-4 | NTclustered | gi|690018549|emb|LM525787.1| | 174720 | g3584 | i0 | 94.595 | 0.0939086294416244 | 37 | 2 | 9 | 0 | 357 | 393 | 36860 | 36824 | Strongyloides papillosus genome assembly S_papillosus_LIN ,scaffold SPAL_contig0000172 | blastn | 37 | 58.4 | 1 | Eukaryota | Opisthokonta | Metazoa | Nematoda | Chromadorea | Rhabditida | Strongyloididae | Strongyloides | Strongyloides papillosus | |
| 21066720 | 21066720 | PRJNA682370_S_NODE_17277_length_172_cov_2.058394_g16665_i0 | PRJNA682370 | 17277 | 172 | 2.058394 | 3.54043768 | Caenorhabditis elegans | 6239 | Nematoda | Nematoda | 178 | 2.2799999999999998e-40 | NTclustered | gi|6623|emb|X16796.1| | 6239 | g16665 | i0 | 85.38 | 31.5290697674419 | 171 | 25 | 99 | 0 | 2 | 172 | 605 | 435 | C.elegans act1 gene | blastn | 5423 | 178 | 1 | Eukaryota | Opisthokonta | Metazoa | Nematoda | Chromadorea | Rhabditida | Rhabditidae | Caenorhabditis | Caenorhabditis elegans | |
| 30536074 | 30536074 | PRJNA682370_S_NODE_14453_length_188_cov_2.986928_g13841_i0 | PRJNA682370 | 14453 | 188 | 2.986928 | 5.61542464 | Rhabditida | 6236 | Nematoda | Nematoda | 84.3 | 3.26e-18 | NR | NP_491061.1 | 6239 | g13841 | i0 | 62.9 | 11.8723404255319 | 62 | 23 | 98.9 | 0 | 2 | 187 | 133 | 194 | NP_491061.1 Large ribosomal subunit protein uL1 [Caenorhabditis elegans] | diamond | 2232 | 84.7 | 0.995277449822904 | Eukaryota | Opisthokonta | Metazoa | Nematoda | Chromadorea | Rhabditida | Rhabditidae | Caenorhabditis | Caenorhabditis elegans | |
| 30745629 | 30745629 | PRJNA682370_S_NODE_4274_length_390_cov_2.760563_g3663_i0 | PRJNA682370 | 4274 | 390 | 2.760563 | 10.7661957 | Loa loa | 7209 | Nematoda | Nematoda | 84.7 | 2.89e-17 | NR | XP_003139952.1 | 7209 | g3663 | i0 | 60 | 0.576923076923077 | 75 | 30 | 57.7 | 0 | 4 | 228 | 134 | 208 | XP_003139952.1 50S ribosomal protein L16 [Loa loa] | diamond | 225 | 84.7 | 1 | Eukaryota | Opisthokonta | Metazoa | Nematoda | Chromadorea | Rhabditida | Onchocercidae | Loa | Loa loa | |
| 31642252 | 31642252 | PRJNA682370_S_NODE_16876_length_174_cov_1.992806_g16264_i0 | PRJNA682370 | 16876 | 174 | 1.992806 | 3.46748244 | Rhabditida | 6236 | Nematoda | Nematoda | 46.2 | 5.26e-4 | NR | ETN72628.1 | 51031 | g16264 | i0 | 54.5 | 1.8448275862069 | 33 | 15 | 56.9 | 0 | 15 | 113 | 119 | 151 | ETN72628.1 glutathione S-transferase protein, partial [Necator americanus] | diamond | 321 | 46.2 | 1 | Eukaryota | Opisthokonta | Metazoa | Nematoda | Chromadorea | Rhabditida | Ancylostomatidae | Necator | Necator americanus | |
| 32180367 | 32180367 | PRJNA682370_S_NODE_6738_length_298_cov_2.228137_g6126_i0 | PRJNA682370 | 6738 | 298 | 2.228137 | 6.63984826 | Caenorhabditis | 6237 | Nematoda | Nematoda | 97.1 | 4.789999999999999e-23 | NR | NP_741102.1 | 6239 | g6126 | i0 | 63 | 1.46979865771812 | 73 | 27 | 73.5 | 0 | 288 | 70 | 73 | 145 | NP_741102.1 Ubiquitin-like protein 1 [Caenorhabditis elegans] | diamond | 438 | 97.1 | 1 | Eukaryota | Opisthokonta | Metazoa | Nematoda | Chromadorea | Rhabditida | Rhabditidae | Caenorhabditis | Caenorhabditis elegans | |
| 32275343 | 32275343 | PRJNA682370_S_NODE_9478_length_239_cov_4.014706_g8866_i0 | PRJNA682370 | 9478 | 239 | 4.014706 | 9.59514734 | root | 1 | Root_unresolved | Root_unresolved | 49.7 | 4.06e-5 | NR | KAI6184729.1 | 293665 | g8866 | i0 | 57.9 | 1.53138075313808 | 38 | 16 | 47.7 | 0 | 235 | 122 | 109 | 146 | KAI6184729.1 Antioxidant, AhpC/TSA family [Aphelenchoides bicaudatus] | diamond | 366 | 50.1 | 0.992015968063872 | Eukaryota | Opisthokonta | Metazoa | Nematoda | Chromadorea | Rhabditida | Aphelenchoididae | Aphelenchoides | Aphelenchoides bicaudatus | |
| 32307112 | 32307112 | PRJNA682370_S_NODE_13279_length_197_cov_1.228395_g12667_i0 | PRJNA682370 | 13279 | 197 | 1.228395 | 2.41993815 | Metazoa | 33208 | Nematoda | Nematoda | 52 | 6.95e-6 | NR | ULT87711.1 | 6238 | g12667 | i0 | 40.4 | 9.57868020304569 | 57 | 31 | 86.8 | 1 | 1 | 171 | 148 | 201 | ULT87711.1 hypothetical protein L3Y34_007112 [Caenorhabditis briggsae] | diamond | 1887 | 52.4 | 0.99236641221374 | Eukaryota | Opisthokonta | Metazoa | Nematoda | Chromadorea | Rhabditida | Rhabditidae | Caenorhabditis | Caenorhabditis briggsae |
Advanced export
JSON shape: default, array, newline-delimited
CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;