RNAquarium Metadata Server
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contig_metadata

12 rows where bioproject = "PRJNA682370" and tax_clade = "core chlorophytes"

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analysis 2

tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • core chlorophytes · 12 ✖

bioproject 1

  • PRJNA682370 · 12 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
664327 664327 PRJNA682370_S_NODE_21981_length_156_cov_1.264463_g21369_i0 PRJNA682370 21981 156 1.264463 1.97256228 Tetraselmis suecica 270643 Plants Plants 134 4.4600000000000006e-27   NTclustered gi|1486933343|gb|MF957257.1| 270643 g21369 i0 82.468 40.5448717948718 154 25 98 2 4 156 999 847 Tetraselmis suecica heat shock protein 70 mRNA, complete cds blastn 6325 134 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorodendrophyceae Chlorodendrales Chlorodendraceae Tetraselmis Tetraselmis suecica
664537 664537 PRJNA682370_S_NODE_7061_length_287_cov_2.134921_g6449_i0 PRJNA682370 7061 287 2.134921 6.12722327 Dicloster acuatus 91190 Plants Plants 134 9.21e-27   NTclustered gi|2724824305|gb|PP746556.1| 91190 g6449 i0 80.925 76.0313588850174 173 30 60 3 43 214 1587 1417 Dicloster acuatus culture SAG:41.98 mitochondrion, complete genome blastn 21821 134 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Dicloster Dicloster acuatus
5003002 5003002 PRJNA682370_S_NODE_15064_length_184_cov_2.120805_g14452_i0 PRJNA682370 15064 184 2.120805 3.9022812 Trebouxiaceae 2507902 Plants Plants 126 9.12e-25   NTclustered gi|1750939486|gb|MH917293.1| 1825957 g14452 i0 91.304 98.8315217391304 92 8 50 0 47 138 15464 15373 Trebouxia sp. TR9 mitochondrion, complete genome blastn 18185 126 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Trebouxia Trebouxia lynnae
5003006 5003006 PRJNA682370_S_NODE_15704_length_180_cov_2.606897_g15092_i0 PRJNA682370 15704 180 2.606897 4.6924146 Coccomyxa subellipsoidea C-169 574566 Plants Plants 85.9 5.97e-18   NR XP_005648509.1 574566 g15092 i0 63.8 4.75 58 18 96.7 1 5 178 127 181 XP_005648509.1 glutamine synthetase [Coccomyxa subellipsoidea C-169] diamond 855 85.9 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae   Coccomyxaceae Coccomyxa Coccomyxa subellipsoidea
10868241 10868241 PRJNA682370_S_NODE_16689_length_175_cov_1.835714_g16077_i0 PRJNA682370 16689 175 1.835714 3.2124995 Eukaryota 2759 Plants Plants 110 8.34e-29   NR KAF5828155.1 3046 g16077 i0 87.9 21.8571428571429 58 7 99.4 0 174 1 81 138 KAF5828155.1 cyclophilin [Dunaliella salina] diamond 3825 110 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Dunaliellaceae Dunaliella Dunaliella salina
13418239 13418239 PRJNA682370_S_NODE_17271_length_172_cov_2.299270_g16659_i0 PRJNA682370 17271 172 2.29927 3.9547444 Bryopsis sp. KO-2 3115439 Plants Plants 82 1.95e-16   NR GMH46020.1 3041901 g16659 i0 64.3 0.976744186046512 56 20 97.7 0 170 3 475 530 GMH46020.1 hypothetical protein BSKO_13984 [Bryopsis sp. KO-2023] diamond 168 82 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Ulvophyceae Bryopsidales Bryopsidaceae Bryopsis Bryopsis sp. KO-2023
27093722 27093722 PRJNA682370_S_NODE_11382_length_215_cov_1.872222_g10770_i0 PRJNA682370 11382 215 1.872222 4.0252773 root 1 Root_unresolved Root_unresolved 68.2 2.68e-11   NR KAG2485882.1 47281 g10770 i0 30.9 6.01395348837209 136 28 97.7 1 213 4 198 333 KAG2485882.1 hypothetical protein HYH03_015465 [Edaphochlamys debaryana] diamond 1293 68.2 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales   Edaphochlamys Edaphochlamys debaryana
27946595 27946595 PRJNA682370_S_NODE_18705_length_166_cov_2.106870_g18093_i0 PRJNA682370 18705 166 2.10687 3.4974042 Eukaryota 2759 Plants Plants 93.2 1.01e-20   NR KAK9817935.1 41462 g18093 i0 64.8 48.7951807228916 54 19 97.6 0 164 3 180 233 KAK9817935.1 hypothetical protein WJX72_004517 [[Myrmecia] bisecta] diamond 8100 94 0.991489361702128 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Myrmecia [Myrmecia] bisecta
29955775 29955775 PRJNA682370_S_NODE_22991_length_153_cov_1.915254_g22379_i0 PRJNA682370 22991 153 1.915254 2.93033862 Pedinophyceae sp. YPF-7 765719 Plants Plants 54.3 1.72e-7   NR CAG9466578.1 765719 g22379 i0 51.9 1.01960784313725 52 24 100 1 153 1 79 130 CAG9466578.1 unnamed protein product [Pedinophyceae sp. YPF-701] diamond 156 54.3 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Pedinophyceae       Pedinophyceae sp. YPF-701
29967471 29967471 PRJNA682370_S_NODE_8871_length_250_cov_2.762791_g8259_i0 PRJNA682370 8871 250 2.762791 6.9069775 Eukaryota 2759 Plants Plants 115 4.07e-31   NR KAK2080556.1 3111 g8259 i0 70.3 7.104 74 22 88.8 0 249 28 33 106 KAK2080556.1 hypothetical protein QBZ16_000409 [Prototheca wickerhamii] diamond 1776 116 0.991379310344828 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Prototheca Prototheca wickerhamii
30050378 30050378 PRJNA682370_S_NODE_20271_length_161_cov_1.261905_g19659_i0 PRJNA682370 20271 161 1.261905 2.03166705 Bryopsis sp. KO-2 3115439 Plants Plants 78.2 2.71e-15   NR GMH32513.1 3041901 g19659 i0 67.9 4.93788819875776 53 17 98.8 0 161 3 293 345 GMH32513.1 hypothetical protein BSKO_00347 [Bryopsis sp. KO-2023] diamond 795 78.2 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Ulvophyceae Bryopsidales Bryopsidaceae Bryopsis Bryopsis sp. KO-2023
31294423 31294423 PRJNA682370_S_NODE_21915_length_156_cov_1.438017_g21303_i0 PRJNA682370 21915 156 1.438017 2.24330652 Chlamydomonas 3052 Plants Plants 58.5 9.28e-9   NR KAG2438503.1 51695 g21303 i0 53.2 3.67307692307692 47 22 90.4 0 4 144 82 128 KAG2438503.1 hypothetical protein HXX76_005054 [Chlamydomonas incerta] diamond 573 58.9 0.99320882852292 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas incerta

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;