RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where bioproject = "PRJNA682370", tax_clade = "Sar" and tax_phylum = "Perkinsozoa"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Perkinsozoa · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA682370 · 3 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
30461703 30461703 PRJNA682370_S_NODE_13033_length_199_cov_1.182927_g12421_i0 PRJNA682370 13033 199 1.182927 2.35402473 Perkinsus marinus ATCC 5 31276 SAR_Eukaryotes SAR_Eukaryotes 90.9 1.5e-20   NR XP_002778404.1 423536 g12421 i0 78.6 1.67336683417085 56 12 84.4 0 199 32 170 225 XP_002778404.1 ribosomal protein L3, putative [Perkinsus marinus ATCC 50983] diamond 333 90.9 1 Eukaryota Sar   Perkinsozoa   Perkinsida Perkinsidae Perkinsus Perkinsus marinus
30473042 30473042 PRJNA682370_S_NODE_12273_length_206_cov_1.210526_g11661_i0 PRJNA682370 12273 206 1.210526 2.49368356 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 103 5.59e-25   NR KAF4746644.1 32597 g11661 i0 61.8 8.8252427184466 68 26 99 0 1 204 131 198 KAF4746644.1 hypothetical protein FOZ62_003798, partial [Perkinsus olseni] diamond 1818 104 0.990384615384615 Eukaryota Sar   Perkinsozoa   Perkinsida Perkinsidae Perkinsus Perkinsus olseni
31800328 31800328 PRJNA682370_S_NODE_15957_length_179_cov_1.493056_g15345_i0 PRJNA682370 15957 179 1.493056 2.67257024 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 42.4 0.0218   NR KAF4666914.1 330153 g15345 i0 37.3 1.79329608938547 51 31 83.8 1 6 155 229 279 KAF4666914.1 extended synaptotagmin-like protein [Perkinsus chesapeaki] diamond 321 42.4 1 Eukaryota Sar   Perkinsozoa   Perkinsida Perkinsidae Perkinsus Perkinsus chesapeaki

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;