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contig_metadata

9 rows where bioproject = "PRJNA682370", tax_clade = "Sar" and tax_phylum = "Oomycota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Oomycota · 9 ✖

tax_clade 1

bioproject 1

  • PRJNA682370 · 9 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3215076 3215076 PRJNA682370_S_NODE_19223_length_164_cov_3.379845_g18611_i0 PRJNA682370 19223 164 3.379845 5.5429458 Phytophthora afrocarpa 2843340 SAR_Eukaryotes SAR_Eukaryotes 185 1.2899999999999997e-42   NTclustered gi|2049963265|gb|MT762326.1| 2843340 g18611 i0 87.117 98.4878048780488 163 21 99 0 1 163 370 208 Phytophthora afrocarpa isolate CMW54635 beta-tubulin (BTUB) gene, partial cds blastn 16152 185 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora afrocarpa
4492450 4492450 PRJNA682370_S_NODE_6604_length_302_cov_2.509363_g5992_i0 PRJNA682370 6604 302 2.509363 7.57827626 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 173 6.54e-53   NR KAI9994045.1 4787 g5992 i0 77 11.9205298013245 100 23 99.3 0 1 300 65 164 KAI9994045.1 hypothetical protein PInf_016604 [Phytophthora infestans] diamond 3600 174 0.994252873563218 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora infestans
5003094 5003094 PRJNA682370_S_NODE_724_length_986_cov_3.228181_g406_i0 PRJNA682370 724 986 3.228181 31.82986466 Aphanomyces 100860 SAR_Eukaryotes SAR_Eukaryotes 527 1.3599999999999994e-144   NTclustered gi|1111669722|ref|NC_032051.1| 112090 g406 i0 77.972 67.6957403651116 917 150 92 33 1 903 1854 2732 Aphanomyces astaci isolate AP03 mitochondrion, complete genome blastn 66748 527 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces astaci
8827570 8827570 PRJNA682370_S_NODE_24147_length_151_cov_1.094828_g23535_i0 PRJNA682370 24147 151 1.094828 1.65319028 Pythiaceae 4782 SAR_Eukaryotes SAR_Eukaryotes 70.9 1.28e-12   NR KAF1330216.1 82926 g23535 i0 68.8 3.87417218543046 48 15 95.4 0 4 147 246 293 KAF1330216.1 Methylenetetrahydrofolate reductase, partial [Globisporangium splendens] diamond 585 70.9 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Globisporangium Globisporangium splendens
11378265 11378265 PRJNA682370_S_NODE_9089_length_246_cov_1.900474_g8477_i0 PRJNA682370 9089 246 1.900474 4.67516604 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 117 2.15e-31   NR KAH9126227.1 100861 g8477 i0 74.6 13.9634146341463 71 18 86.6 0 245 33 64 134 KAH9126227.1 hypothetical protein AeMF1_003327 [Aphanomyces euteiches] diamond 3435 117 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces euteiches
21066953 21066953 PRJNA682370_S_NODE_5677_length_331_cov_2.199324_g5065_i0 PRJNA682370 5677 331 2.199324 7.27976244 Aphanomyces euteiches 100861 SAR_Eukaryotes SAR_Eukaryotes 156 1.4199999999999998e-46   NR KAF0743747.1 100861 g5065 i0 67.9 1.97583081570997 109 35 98.8 0 3 329 25 133 KAF0743747.1 hypothetical protein Ae201684_001401 [Aphanomyces euteiches] diamond 654 156 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces euteiches
29241185 29241185 PRJNA682370_S_NODE_8209_length_263_cov_1.864035_g7597_i0 PRJNA682370 8209 263 1.864035 4.90241205 Peronosporomycetes 3418804 SAR_Eukaryotes SAR_Eukaryotes 94.7 9.83e-22   NR XP_067814288.1 4779 g7597 i0 66.2 9.4106463878327 77 26 87.8 0 262 32 99 175 XP_067814288.1 hypothetical protein CCR75_001696 [Bremia lactucae] diamond 2475 95.5 0.991623036649215 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Bremia Bremia lactucae
31409404 31409404 PRJNA682370_S_NODE_12536_length_203_cov_2.089286_g11924_i0 PRJNA682370 12536 203 2.089286 4.24125058 Aphanomyces stellatus 120398 SAR_Eukaryotes SAR_Eukaryotes 84.3 4.64e-17   NR KAF0717707.1 120398 g11924 i0 69.7 0.975369458128079 66 19 97.5 1 199 2 222 286 KAF0717707.1 hypothetical protein As57867_002132 [Aphanomyces stellatus] diamond 198 84.3 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces stellatus
32485166 32485166 PRJNA682370_S_NODE_22279_length_155_cov_1.475000_g21667_i0 PRJNA682370 22279 155 1.475 2.28625 Albugo candida 65357 SAR_Eukaryotes SAR_Eukaryotes 77.4 6.49e-15   NR CCI50303.1 65357 g21667 i0 74 3.89032258064516 50 13 96.8 0 155 6 419 468 CCI50303.1 unnamed protein product [Albugo candida] diamond 603 77.4 1 Eukaryota Sar   Oomycota Peronosporomycetes Albuginales Albuginaceae Albugo Albugo candida

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;