RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where bioproject = "PRJNA682370" and tax_clade = "Haptista"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

tax_clade 1

  • Haptista · 3 ✖

bioproject 1

  • PRJNA682370 · 3 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27461494 27461494 PRJNA682370_S_NODE_9083_length_246_cov_2.260664_g8471_i0 PRJNA682370 9083 246 2.260664 5.56123344 Chrysochromulina tobinii 1460289 Haptophyta other_Eukaryota 62.8 2.87e-9   NR KOO30387.1 1460289 g8471 i0 55.2 1.71951219512195 58 25 69.5 1 53 223 20 77 KOO30387.1 papain family cysteine protease containing protein [Chrysochromulina tobinii] diamond 423 62.8 1 Eukaryota Haptista   Haptophyta   Prymnesiales Chrysochromulinaceae Chrysochromulina Chrysochromulina tobinii
29556725 29556725 PRJNA682370_S_NODE_24290_length_151_cov_0.939655_g23678_i0 PRJNA682370 24290 151 0.939655 1.41887905 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 93.2 1.71e-20   NR KAL1507771.1 97485 g23678 i0 93.9 25.1920529801325 49 3 97.4 0 1 147 40 88 KAL1507771.1 hypothetical protein AB1Y20_007381 [Prymnesium parvum] diamond 3804 93.2 1 Eukaryota Haptista   Haptophyta   Prymnesiales Prymnesiaceae Prymnesium Prymnesium parvum
31010013 31010013 PRJNA682370_S_NODE_20954_length_159_cov_1.266129_g20342_i0 PRJNA682370 20954 159 1.266129 2.01314511 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 79.7 1.42e-17   NR KAL1506995.1 97485 g20342 i0 76.9 3.92452830188679 52 12 98.1 0 2 157 26 77 KAL1506995.1 hypothetical protein AB1Y20_007858 [Prymnesium parvum] diamond 624 79.7 1 Eukaryota Haptista   Haptophyta   Prymnesiales Prymnesiaceae Prymnesium Prymnesium parvum

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;