RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

8 rows where bioproject = "PRJNA682370", tax_clade = "Discoba" and tax_phylum = "Euglenozoa"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

  • Euglenozoa · 8 ✖

tax_clade 1

  • Discoba · 8 ✖

bioproject 1

  • PRJNA682370 · 8 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4492490 4492490 PRJNA682370_S_NODE_7804_length_271_cov_3.165254_g7192_i0 PRJNA682370 7804 271 3.165254 8.57783834 Trypanosoma theileri 67003 Euglenozoa other_Eukaryota 52.8 0.025   NTclustered gi|1624757229|ref|XM_029029543.1| 67003 g7192 i0 94.286 0.129151291512915 35 1 13 1 44 77 2142 2176 Trypanosoma theileri uncharacterized protein (TM35_000381290), partial mRNA blastn 35 52.8 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Trypanosoma Trypanosoma theileri
15967062 15967062 PRJNA682370_S_NODE_23133_length_153_cov_1.330508_g22521_i0 PRJNA682370 23133 153 1.330508 2.03567724 Bodo saltans 75058 Euglenozoa other_Eukaryota 77.8 4.5e-15   NR CUG87077.1 75058 g22521 i0 73.9 1.80392156862745 46 12 90.2 0 14 151 309 354 CUG87077.1 dihydrolipoamide acetyltransferase, putative [Bodo saltans] diamond 276 77.8 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Eubodonida Bodonidae Bodo Bodo saltans
17242163 17242163 PRJNA682370_S_NODE_15614_length_181_cov_1.369863_g15002_i0 PRJNA682370 15614 181 1.369863 2.47945203 Leishmania infantum 5671 Euglenozoa other_Eukaryota 111 2.5e-20   NTclustered gi|339897917|ref|XM_003392361.1| 435258 g15002 i0 78.022 9.3646408839779 182 37 99 3 1 180 538 718 Leishmania infantum JPCM5 40S ribosomal protein S2 partial mRNA blastn 1695 111 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Leishmania Leishmania infantum
21066629 21066629 PRJNA682370_S_NODE_12997_length_199_cov_1.615854_g12385_i0 PRJNA682370 12997 199 1.615854 3.21554946 Entosiphon sulcatum 101493 Euglenozoa other_Eukaryota 274 3.3899999999999997e-69   NTclustered gi|226347428|gb|FJ807254.1| 101493 g12385 i0 91.457 23.608040201005 199 17 100 0 1 199 581 383 Entosiphon sulcatum elongation factor 1 alpha gene, partial cds blastn 4698 274 1 Eukaryota Discoba   Euglenozoa Euglenida Heteronematales Peranemataceae Entosiphon Entosiphon sulcatum
24890424 24890424 PRJNA682370_S_NODE_18460_length_167_cov_1.954545_g17848_i0 PRJNA682370 18460 167 1.954545 3.26409015 Keelungia nitschei 2529305 Euglenozoa other_Eukaryota 132 1.7500000000000002e-26   NTclustered gi|1581142783|gb|MK567808.1| 2529305 g17848 i0 89.423 28.562874251497 104 11 62 0 1 104 1577 1474 Keelungia nitschei strain HFCC166 large subunit ribosomal RNA gene, partial sequence blastn 4770 132 1 Eukaryota Discoba   Euglenozoa Euglenida Heteronematales Heteronematidae Keelungia Keelungia nitschei
29229707 29229707 PRJNA682370_S_NODE_22949_length_153_cov_2.788136_g22337_i0 PRJNA682370 22949 153 2.788136 4.26584808 Angomonas deanei 59799 Euglenozoa other_Eukaryota 43.1 0.00796   NR CAD2221692.1 59799 g22337 i0 44.9 0.96078431372549 49 23 94.1 2 8 151 218 263 CAD2221692.1 hypothetical protein, conserved [Angomonas deanei] diamond 147 43.1 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Angomonas Angomonas deanei
31093187 31093187 PRJNA682370_S_NODE_7855_length_270_cov_2.212766_g7243_i0 PRJNA682370 7855 270 2.212766 5.9744682 Bodo saltans 75058 Euglenozoa other_Eukaryota 99 7.55e-22   NR CUE71938.1 75058 g7243 i0 61.4 4.61111111111111 70 27 77.8 0 269 60 338 407 CUE71938.1 cysteine peptidase, putative [Bodo saltans] diamond 1245 99 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Eubodonida Bodonidae Bodo Bodo saltans
31725561 31725561 PRJNA682370_S_NODE_3097_length_469_cov_2.806452_g2493_i0 PRJNA682370 3097 469 2.806452 13.16225988 Phytomonas sp. EM1 479712 Euglenozoa other_Eukaryota 70.9 6.02e-11   NR CCW63474.1 479712 g2493 i0 29.7 0.927505330490405 145 91 88.3 3 449 36 174 314 CCW63474.1 unnamed protein product [Phytomonas sp. EM1] diamond 435 70.9 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Phytomonas Phytomonas sp. EM1

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;