RNAquarium Metadata Server
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contig_metadata

6 rows where bioproject = "PRJNA682370", tax_clade = "Amoebozoa" and tax_phylum = "Discosea"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Discosea · 6 ✖

tax_clade 1

  • Amoebozoa · 6 ✖

bioproject 1

  • PRJNA682370 · 6 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4492555 4492555 PRJNA682370_S_NODE_9684_length_236_cov_2.258706_g9072_i0 PRJNA682370 9684 236 2.258706 5.33054616 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 226 1.18e-54   NTclustered gi|470420395|ref|XM_004337241.1| 1257118 g9072 i0 84.188 38.6228813559322 234 35 99 2 1 233 2390 2158 Acanthamoeba castellanii str. Neff eukaryotic translation elongation factor 2, putative (ACA1_220140), partial mRNA blastn 9115 226 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
27840011 27840011 PRJNA682370_S_NODE_16424_length_177_cov_1.112676_g15812_i0 PRJNA682370 16424 177 1.112676 1.96943652 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 70.5 1.28e-12   NR XP_004341414.1 1257118 g15812 i0 61.1 0.915254237288136 54 20 91.5 1 3 164 77 129 XP_004341414.1 Factin-capping protein subunit alpha-2, putative [Acanthamoeba castellanii str. Neff] diamond 162 70.5 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
28029773 28029773 PRJNA682370_S_NODE_17305_length_172_cov_1.751825_g16693_i0 PRJNA682370 17305 172 1.751825 3.013139 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 84.7 6.49e-20   NR XP_004336976.1 1257118 g16693 i0 77.2 0.994186046511628 57 13 99.4 0 2 172 9 65 XP_004336976.1 major vault protein [Acanthamoeba castellanii str. Neff] diamond 171 84.7 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
28345377 28345377 PRJNA682370_S_NODE_11746_length_211_cov_2.460227_g11134_i0 PRJNA682370 11746 211 2.460227 5.19107897 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 67.8 3.52e-11   NR XP_004341947.1 1257118 g11134 i0 53.5 1.00947867298578 71 31 98.1 1 3 209 234 304 XP_004341947.1 gelation factor, putative [Acanthamoeba castellanii str. Neff] diamond 213 67.8 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
28440258 28440258 PRJNA682370_S_NODE_13946_length_192_cov_1.662420_g13334_i0 PRJNA682370 13946 192 1.66242 3.1918464 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 87.4 2.94e-19   NR XP_004349741.1 1257118 g13334 i0 61.9 1.96875 63 24 98.4 0 3 191 58 120 XP_004349741.1 uncharacterized protein ACA1_034610 [Acanthamoeba castellanii str. Neff] diamond 378 87.4 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
29355892 29355892 PRJNA682370_S_NODE_8989_length_248_cov_1.685446_g8377_i0 PRJNA682370 8989 248 1.685446 4.17990608 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 43.1 0.0282   NR XP_004338989.1 1257118 g8377 i0 39.7 0.762096774193548 63 32 69 1 247 77 373 435 XP_004338989.1 encystationmediating serine proteinase [Acanthamoeba castellanii str. Neff] diamond 189 43.1 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;