RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where bioproject = "PRJNA682078" and tax_phylum = "Discosea"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Discosea · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA682078 · 3 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3725964 3725964 PRJNA682078_P_NODE_72743_length_405_cov_2.307229_g70968_i0 PRJNA682078 72743 405 2.307229 9.34427745 Cochliopodium 313557 Discosea other_Eukaryota 749 0   NTclustered gi|659103902|gb|KJ569713.1| 313997 g70968 i0 100 57.4222222222222 405 0 100 0 1 405 1031 627 Cochliopodium minus clone 1101 18S ribosomal RNA gene, partial sequence blastn 23256 749 1 Eukaryota Amoebozoa   Discosea   Himatismenida Cochliopodiidae Cochliopodium Cochliopodium minus
9588973 9588973 PRJNA682078_P_NODE_216608_length_253_cov_2.805556_g214831_i0 PRJNA682078 216608 253 2.805556 7.09805668 Stenamoeba sp. HP839 1215627 Discosea other_Eukaryota 460 3.2199999999999996e-125   NTclustered gi|399764210|gb|JQ271721.1| 1215627 g214831 i0 99.605 48.5217391304348 253 0 100 1 1 253 1607 1858 Stenamoeba sp. HP839 18S ribosomal RNA gene, partial sequence blastn 12276 460 1 Eukaryota Amoebozoa   Discosea   Longamoebia Thecamoebida Stenamoeba Stenamoeba sp. HP839
10862300 10862300 PRJNA682078_P_NODE_130369_length_314_cov_0.941909_g128592_i0 PRJNA682078 130369 314 0.941909 2.95759426 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 292 1.59e-74   NTclustered gi|300078498|gb|GU001160.1| 5755 g128592 i0 91.743 1.91082802547771 218 7 67 9 101 309 6187 6402 Acanthamoeba castellanii 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 600 292 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;