RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA682078" and tax_phylum = "Bacillariophyta"

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tax_superkingdom 1

tax_phylum 1

  • Bacillariophyta · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA682078 · 2 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
29418769 29418769 PRJNA682078_P_NODE_288729_length_241_cov_0.916667_g286952_i0 PRJNA682078 288729 241 0.916667 2.20916747 Halamphora coffeaeformis 1487565 SAR_Eukaryotes SAR_Eukaryotes 131 1.7299999999999999e-34   NR YP_009686345.1 1487565 g286952 i0 82.5 2.96265560165975 80 14 99.6 0 240 1 38 117 YP_009686345.1 hypothetical protein [Halamphora coffeaeformis] diamond 714 131 1 Eukaryota Sar   Bacillariophyta Bacillariophyceae Naviculales Amphipleuraceae Halamphora Halamphora coffeiformis
32800018 32800018 PRJNA682078_P_NODE_218140_length_253_cov_1.227778_g216363_i0 PRJNA682078 218140 253 1.227778 3.10627834 Mayamaea pseudoterrestris 2872254 SAR_Eukaryotes SAR_Eukaryotes 161 9.86e-44   NR GKY98856.1 2872254 g216363 i0 91.7 0.99604743083004 84 7 99.6 0 1 252 515 598 GKY98856.1 hypothetical protein MPSEU_000841600 [Mayamaea pseudoterrestris] diamond 252 161 1 Eukaryota Sar   Bacillariophyta Bacillariophyceae Naviculales Naviculaceae Mayamaea Mayamaea pseudoterrestris

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;