RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA682078", tax_kingdom = "Thermotogati" and tax_phylum = "Synergistota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Synergistota · 3 ✖

tax_kingdom 1

  • Thermotogati · 3 ✖

bioproject 1

  • PRJNA682078 · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
10102185 10102185 PRJNA682078_P_NODE_29388_length_629_cov_2.703237_g27664_i0 PRJNA682078 29388 629 2.703237 17.00336073 Thermanaerovibrio 81461 Bacteria Bacteria 603 1.37e-167   NTclustered gi|470485441|ref|NR_076701.1| 81462 g27664 i0 84.202 87.6581875993641 633 86 100 13 1 629 636 14 Thermanaerovibrio acidaminovorans strain Su883 23S ribosomal RNA gene, complete sequence blastn 55137 608 0.991776315789474 Bacteria   Thermotogati Synergistota Synergistia Synergistales Synergistaceae Thermanaerovibrio Thermanaerovibrio acidaminovorans
22849748 22849748 PRJNA682078_P_NODE_17198_length_828_cov_2.589404_g15690_i0 PRJNA682078 17198 828 2.589404 21.44026512 Thermanaerovibrio 81461 Bacteria Bacteria 852 0   NTclustered gi|470485441|ref|NR_076701.1| 81462 g15690 i0 85.493 265.468599033816 841 94 99 23 5 828 1449 620 Thermanaerovibrio acidaminovorans strain Su883 23S ribosomal RNA gene, complete sequence blastn 219808 852 1 Bacteria   Thermotogati Synergistota Synergistia Synergistales Synergistaceae Thermanaerovibrio Thermanaerovibrio acidaminovorans
27271720 27271720 PRJNA682078_P_NODE_259143_length_246_cov_0.890173_g257366_i0 PRJNA682078 259143 246 0.890173 2.18982558 Aminivibrio pyruvatiphilus 1005740 Bacteria Bacteria 118 3.8599999999999997e-32   NR WP_133957322.1 1005740 g257366 i0 72.8 1.97560975609756 81 22 98.8 0 2 244 33 113 WP_133957322.1 hypothetical protein [Aminivibrio pyruvatiphilus] diamond 486 118 1 Bacteria   Thermotogati Synergistota Synergistia Synergistales Aminobacteriaceae Aminivibrio Aminivibrio pyruvatiphilus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;