RNAquarium Metadata Server
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contig_metadata

5 rows where bioproject = "PRJNA682078", tax_kingdom = "Pararnavirae" and tax_superkingdom = "Viruses"

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tax_superkingdom 1

  • Viruses · 5 ✖

tax_phylum 1

tax_kingdom 1

  • Pararnavirae · 5 ✖

bioproject 1

  • PRJNA682078 · 5 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2449330 2449330 PRJNA682078_P_NODE_60382_length_442_cov_1.972900_g58608_i0 PRJNA682078 60382 442 1.9729 8.720218 root 1 Root_unresolved Root_unresolved 800 0   NTclustered gi|331934|gb|J02255.1|MLMCG 11786 g58608 i0 99.321 100 442 3 100 0 1 442 2905 2464 Moloney murine leukemia virus, complete genome blastn 44200 800 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus murleu
7551992 7551992 PRJNA682078_P_NODE_65646_length_425_cov_1.602273_g63871_i0 PRJNA682078 65646 425 1.602273 6.80966025 Gammaretrovirus 153135 Viruses Viruses 780 0   NTclustered gi|331934|gb|J02255.1|MLMCG 11786 g63871 i0 99.765 93.6541176470588 425 1 100 0 1 425 4926 5350 Moloney murine leukemia virus, complete genome blastn 39803 780 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus murleu
13928273 13928273 PRJNA682078_P_NODE_78031_length_392_cov_2.275862_g76256_i0 PRJNA682078 78031 392 2.275862 8.92137904 root 1 Root_unresolved Root_unresolved 725 0   NTclustered gi|56681628|gb|AY714514.1| 11786 g76256 i0 100 34.3010204081633 392 0 100 0 1 392 1798 1407 Murine leukemia virus isolate M-RV_10C integrase (pol) and envelope glycoprotein (env) genes, partial cds blastn 13446 725 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus murleu
15201812 15201812 PRJNA682078_P_NODE_253572_length_246_cov_1.780347_g251795_i0 PRJNA682078 253572 246 1.780347 4.37965362 Gammaretrovirus 153135 Viruses Viruses 449 6.74e-122   NTclustered gi|331934|gb|J02255.1|MLMCG 11786 g251795 i0 99.593 81.2479674796748 246 1 100 0 1 246 4208 3963 Moloney murine leukemia virus, complete genome blastn 19987 449 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus murleu
21574779 21574779 PRJNA682078_P_NODE_19037_length_785_cov_1.485955_g17468_i0 PRJNA682078 19037 785 1.485955 11.66474675 root 1 Root_unresolved Root_unresolved 1406 0   NTclustered gi|331934|gb|J02255.1|MLMCG 11786 g17468 i0 98.981 44.3312101910828 785 8 100 0 1 785 6234 7018 Moloney murine leukemia virus, complete genome blastn 34800 1406 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus murleu

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;