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contig_metadata

26 rows where bioproject = "PRJNA682078" and tax_kingdom = "Methanobacteriati"

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analysis 2

tax_superkingdom 1

tax_kingdom 1

  • Methanobacteriati · 26 ✖

bioproject 1

  • PRJNA682078 · 26 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3212824 3212824 PRJNA682078_P_NODE_279663_length_242_cov_2.621302_g277886_i0 PRJNA682078 279663 242 2.621302 6.34355084 Haloquadratum walsbyi 293091 Archaea Archaea 261 3.33e-65   NTclustered gi|334353260|emb|FR746099.1| 768065 g277886 i0 88.732 15.0371900826446 213 24 88 0 29 241 284065 283853 Haloquadratum walsbyi C23 complete genome blastn 3639 261 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloferacaceae Haloquadratum Haloquadratum walsbyi
3724985 3724985 PRJNA682078_P_NODE_254023_length_246_cov_1.508671_g252246_i0 PRJNA682078 254023 246 1.508671 3.71133066 root 1 Root_unresolved Root_unresolved 455 1.4500000000000002e-123   NTclustered gi|216917|dbj|D12983.1|PYWPOL 2261 g252246 i0 100 7.95934959349593 246 0 100 0 1 246 447 692 Pyrococcus furiosus pol gene for DNA polymerase, complete cds blastn 1958 455 1 Archaea   Methanobacteriati Methanobacteriota Thermococci Thermococcales Thermococcaceae Pyrococcus Pyrococcus furiosus
6278194 6278194 PRJNA682078_P_NODE_73105_length_404_cov_2.211480_g71330_i0 PRJNA682078 73105 404 2.21148 8.9343792 root 1 Root_unresolved Root_unresolved 747 0   NTclustered gi|216917|dbj|D12983.1|PYWPOL 2261 g71330 i0 100 6 404 0 100 0 1 404 1606 1203 Pyrococcus furiosus pol gene for DNA polymerase, complete cds blastn 2424 747 1 Archaea   Methanobacteriati Methanobacteriota Thermococci Thermococcales Thermococcaceae Pyrococcus Pyrococcus furiosus
7552423 7552423 PRJNA682078_P_NODE_97526_length_355_cov_2.081560_g95750_i0 PRJNA682078 97526 355 2.08156 7.389538 root 1 Root_unresolved Root_unresolved 645 1.2099999999999996e-180   NTclustered gi|436492|gb|U00707.1|PSU00707 33866 g95750 i0 99.437 11.6901408450704 355 2 100 0 1 355 1120 766 Pyrococcus sp. Deep Vent DNA polymerase precursor gene, complete cds blastn 4150 645 1 Archaea   Methanobacteriati Methanobacteriota Thermococci Thermococcales Thermococcaceae Pyrococcus Pyrococcus sp.
14689090 14689090 PRJNA682078_P_NODE_202572_length_261_cov_2.026596_g200795_i0 PRJNA682078 202572 261 2.026596 5.28941556 root 1 Root_unresolved Root_unresolved 55.5 1.22e-7   NR MCX9024633.1 2032688 g200795 i0 73.3 2.06896551724138 30 8 34.5 0 259 170 66 95 MCX9024633.1 HNH endonuclease signature motif containing protein [Candidatus Methanoperedens sp.] diamond 540 55.5 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanosarcinales Candidatus Methanoperedentaceae Candidatus Methanoperedens Candidatus Methanoperedens sp.
16475401 16475401 PRJNA682078_P_NODE_199073_length_263_cov_2.257895_g197296_i0 PRJNA682078 199073 263 2.257895 5.93826385 root 1 Root_unresolved Root_unresolved 486 5.5499999999999986e-133   NTclustered gi|216917|dbj|D12983.1|PYWPOL 2261 g197296 i0 100 6 263 0 100 0 1 263 958 696 Pyrococcus furiosus pol gene for DNA polymerase, complete cds blastn 1578 486 1 Archaea   Methanobacteriati Methanobacteriota Thermococci Thermococcales Thermococcaceae Pyrococcus Pyrococcus furiosus
18509696 18509696 PRJNA682078_P_NODE_101355_length_349_cov_4.764493_g99579_i0 PRJNA682078 101355 349 4.764493 16.62808057 Methanobrevibacter ruminantium 83816 Archaea Archaea 56.5 0.003   NTclustered gi|288541968|gb|CP001719.1| 634498 g99579 i0 100 0.0859598853868195 30 0 9 0 285 314 1575289 1575260 Methanobrevibacter ruminantium M1, complete genome blastn 30 56.5 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter ruminantium
21060528 21060528 PRJNA682078_P_NODE_118777_length_327_cov_1.011811_g117000_i0 PRJNA682078 118777 327 1.011811 3.30862197 Halorubrum ruber 2982524 Archaea Archaea 132 3.84e-26   NTclustered gi|2031421124|gb|CP073695.1| 2982524 g117000 i0 85.714 1.02752293577982 126 16 38 2 1 125 1524454 1524330 Halorubrum ruber strain MBLA0099 chromosome, complete genome blastn 336 132 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloferacaceae Halorubrum Halorubrum ruber
21575350 21575350 PRJNA682078_P_NODE_246537_length_247_cov_2.178161_g244760_i0 PRJNA682078 246537 247 2.178161 5.38005767 Methanocella 570266 Archaea Archaea 52.8 0.022   NTclustered gi|634725790|tpe|HG985935.1| 304371 g244760 i0 94.286 0.566801619433198 35 1 14 1 5 38 44 10 TPA: Methanocella paludicola SANAE tRNA-Lys-CTT-1-1 gene blastn 140 52.8 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanocellales Methanocellaceae Methanocella Methanocella paludicola
21575616 21575616 PRJNA682078_P_NODE_27457_length_651_cov_2.081315_g25739_i0 PRJNA682078 27457 651 2.081315 13.54936065 root 1 Root_unresolved Root_unresolved 1203 0   NTclustered gi|216917|dbj|D12983.1|PYWPOL 2261 g25739 i0 100 6.41628264208909 651 0 100 0 1 651 1673 2323 Pyrococcus furiosus pol gene for DNA polymerase, complete cds blastn 4177 1203 1 Archaea   Methanobacteriati Methanobacteriota Thermococci Thermococcales Thermococcaceae Pyrococcus Pyrococcus furiosus
23612900 23612900 PRJNA682078_P_NODE_199959_length_263_cov_1.315789_g198182_i0 PRJNA682078 199959 263 1.315789 3.46052507 Methanosarcina barkeri 2208 Archaea Archaea 315 2.77e-81   NTclustered gi|805398754|gb|CP009526.1| 1434109 g198182 i0 88.258 1.00380228136882 264 30 100 1 1 263 4349168 4348905 Methanosarcina barkeri str. Wiesmoor, complete genome blastn 264 315 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanosarcinales Methanosarcinaceae Methanosarcina Methanosarcina barkeri
26797230 26797230 PRJNA682078_P_NODE_201761_length_262_cov_1.259259_g199984_i0 PRJNA682078 201761 262 1.259259 3.29925858 Methanotrichaceae archaeon 2595067 Archaea Archaea 64.3 1.17e-9   NR HOT07308.1 2595067 g199984 i0 87.9 0.744274809160305 33 4 37.8 0 164 262 1 33 HOT07308.1 FkbM family methyltransferase [Methanotrichaceae archaeon] diamond 195 64.3 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanotrichales Methanotrichaceae   Methanotrichaceae archaeon
27492908 27492908 PRJNA682078_P_NODE_207723_length_258_cov_2.281081_g205946_i0 PRJNA682078 207723 258 2.281081 5.88518898 Haloarchaeobius litoreus 755306 Archaea Archaea 48.5 3.43e-4   NR WP_256398896.1 755306 g205946 i0 50 0.534883720930233 46 21 51.2 1 161 30 10 55 WP_256398896.1 hypothetical protein [Haloarchaeobius litoreus] diamond 138 48.5 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Halorubellaceae Haloarchaeobius Haloarchaeobius litoreus
27682687 27682687 PRJNA682078_P_NODE_297544_length_228_cov_2.374194_g295767_i0 PRJNA682078 297544 228 2.374194 5.41316232 Methanobacteriota archaeon 2026739 Archaea Archaea 60.8 1.28e-8   NR RZD43220.1 2026739 g295767 i0 40.3 2.07894736842105 77 39 92.1 1 227 18 2672 2748 RZD43220.1 MAG: hypothetical protein CXT73_01170 [Methanobacteriota archaeon] diamond 474 60.8 1 Archaea   Methanobacteriati Methanobacteriota         Methanobacteriota archaeon
27714277 27714277 PRJNA682078_P_NODE_121444_length_324_cov_0.808765_g119667_i0 PRJNA682078 121444 324 0.808765 2.6203986 Halobacteriales archaeon QS_5_7 1904752 Archaea Archaea 43.5 0.0431   NR PSQ11283.1 1919180 g119667 i0 35.4 0.888888888888889 96 57 84.3 2 34 306 89 184 PSQ11283.1 MAG: hypothetical protein BRC93_06035 [Halobacteriales archaeon QS_5_70_15] diamond 288 43.5 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales     Halobacteriales archaeon QS_5_70_15
28092757 28092757 PRJNA682078_P_NODE_293025_length_241_cov_0.863095_g291248_i0 PRJNA682078 293025 241 0.863095 2.08005895 Haloarcula 2237 Archaea Archaea 43.5 0.00443   NR WP_284009536.1 2237 g291248 i0 32.4 0.883817427385892 71 46 85.9 1 11 217 5 75 WP_284009536.1 MULTISPECIES: hypothetical protein [Haloarcula] diamond 213 43.5 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloarculaceae Haloarcula  
28420397 28420397 PRJNA682078_P_NODE_86926_length_374_cov_0.943522_g85151_i0 PRJNA682078 86926 374 0.943522 3.52877228 root 1 Root_unresolved Root_unresolved 142 1.35e-38   NR HET8689236.1 2213 g85151 i0 83.5 2.5427807486631 79 13 63.4 0 5 241 235 313 HET8689236.1 hypothetical protein [Methanosarcina sp.] diamond 951 143 0.993006993006993 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanosarcinales Methanosarcinaceae Methanosarcina Methanosarcina sp.
28850309 28850309 PRJNA682078_P_NODE_122468_length_322_cov_2.120482_g120691_i0 PRJNA682078 122468 322 2.120482 6.8279520399999996 Methanosarcina sp. 2213 Archaea Archaea 105 2.61e-26   NR HET8689243.1 2213 g120691 i0 64.9 0.68944099378882 74 26 68.9 0 3 224 91 164 HET8689243.1 hypothetical protein [Methanosarcina sp.] diamond 222 105 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanosarcinales Methanosarcinaceae Methanosarcina Methanosarcina sp.
28945531 28945531 PRJNA682078_P_NODE_210168_length_257_cov_1.576087_g208391_i0 PRJNA682078 210168 257 1.576087 4.05054359 Methanosarcina sp. 2213 Archaea Archaea 105 3.67e-27   NR HET8685164.1 2213 g208391 i0 57.6 0.992217898832685 85 36 99.2 0 255 1 9 93 HET8685164.1 hypothetical protein [Methanosarcina sp.] diamond 255 105 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanosarcinales Methanosarcinaceae Methanosarcina Methanosarcina sp.
29134947 29134947 PRJNA682078_P_NODE_194549_length_266_cov_1.502591_g192772_i0 PRJNA682078 194549 266 1.502591 3.99689206 Methanobacteriota archaeon 2026739 Archaea Archaea 75.1 4.32e-14   NR MEA2034847.1 2026739 g192772 i0 54.8 0.699248120300752 62 28 69.9 0 5 190 73 134 MEA2034847.1 VWA domain-containing protein [Methanobacteriota archaeon] diamond 186 75.1 1 Archaea   Methanobacteriati Methanobacteriota         Methanobacteriota archaeon
29797682 29797682 PRJNA682078_P_NODE_281651_length_242_cov_0.911243_g279874_i0 PRJNA682078 281651 242 0.911243 2.20520806 Methanoregulaceae archaeon 2485498 Archaea Archaea 53.9 4.91e-7   NR HQJ88396.1 2485498 g279874 i0 61.4 1.42561983471074 57 18 65.7 1 82 240 1 57 HQJ88396.1 hypothetical protein [Methanoregulaceae archaeon] diamond 345 53.9 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanomicrobiales Methanoregulaceae   Methanoregulaceae archaeon
29955757 29955757 PRJNA682078_P_NODE_58551_length_449_cov_1.000000_g56778_i0 PRJNA682078 58551 449 1 4.49 Methanosarcina sp. 2213 Archaea Archaea 199 2.92e-58   NR HET8689240.1 2213 g56778 i0 74.4 1.73051224944321 129 33 86.2 0 446 60 315 443 HET8689240.1 hypothetical protein [Methanosarcina sp.] diamond 777 199 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanosarcinales Methanosarcinaceae Methanosarcina Methanosarcina sp.
31030180 31030180 PRJNA682078_P_NODE_195675_length_265_cov_2.130208_g193898_i0 PRJNA682078 195675 265 2.130208 5.6450512 Salinigranum rubrum 755307 Archaea Archaea 43.1 0.0238   NR WP_162562412.1 755307 g193898 i0 31.7 1.35849056603774 60 41 67.9 0 59 238 118 177 WP_162562412.1 hypothetical protein [Salinigranum rubrum] diamond 360 43.1 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloferacaceae Salinigranum Salinigranum rubrum
31946860 31946860 PRJNA682078_P_NODE_253077_length_246_cov_2.421965_g251300_i0 PRJNA682078 253077 246 2.421965 5.9580339 Methanosarcina sp. 2213 Archaea Archaea 80.5 2.01e-15   NR HET8689294.1 2213 g251300 i0 68.2 0.536585365853659 44 14 53.7 0 246 115 561 604 HET8689294.1 hypothetical protein [Methanosarcina sp.] diamond 132 80.5 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanosarcinales Methanosarcinaceae Methanosarcina Methanosarcina sp.
32705633 32705633 PRJNA682078_P_NODE_275660_length_243_cov_0.905882_g273883_i0 PRJNA682078 275660 243 0.905882 2.20129326 Thermoplasmatota archaeon 2806419 Archaea Archaea 42.4 0.0471   NR MEK6838767.1 2806419 g273883 i0 42.9 1.20987654320988 49 27 59.3 1 4 147 86 134 MEK6838767.1 MFS transporter [Thermoplasmatota archaeon] diamond 294 42.4 1 Archaea   Methanobacteriati Thermoplasmatota         Thermoplasmatota archaeon
32737351 32737351 PRJNA682078_P_NODE_111660_length_335_cov_3.167939_g109883_i0 PRJNA682078 111660 335 3.167939 10.61259565 Methanosarcina sp. 2213 Archaea Archaea 79 2.16e-14   NR HET8689298.1 2213 g109883 i0 38 1.78208955223881 108 63 95.8 2 328 8 114 218 HET8689298.1 hypothetical protein [Methanosarcina sp.] diamond 597 79 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanosarcinales Methanosarcinaceae Methanosarcina Methanosarcina sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;