RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA682078", tax_kingdom = "Fungi" and tax_phylum = "Chytridiomycota"

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tax_superkingdom 1

tax_phylum 1

  • Chytridiomycota · 2 ✖

tax_kingdom 1

  • Fungi · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA682078 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1938355 1938355 PRJNA682078_P_NODE_293802_length_238_cov_3.363636_g292025_i0 PRJNA682078 293802 238 3.363636 8.00545368 Zygophlyctis sp. 3036231 Fungi Fungi 261 3.26e-65   NTclustered gi|2468790888|gb|OQ702882.1| 3036231 g292025 i0 86.92 99.281512605042 237 26 98 5 1 234 4208 3974 Zygophlyctis sp. isolate PSC140 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 23629 261 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Zygophlyctidales Zygophlyctidaceae Zygophlyctis Zygophlyctis sp.
5000761 5000761 PRJNA682078_P_NODE_169104_length_281_cov_1.480769_g167327_i0 PRJNA682078 169104 281 1.480769 4.16096089 root 1 Root_unresolved Root_unresolved 91.6 5.49e-14   NTclustered gi|1027029571|ref|XR_001677165.1| 645134 g167327 i0 90 5.90747330960854 70 7 25 0 167 236 2772 2703 Spizellomyces punctatus DAOM BR117 28S ribosomal RNA (SPPG_11007), partial rRNA blastn 1660 91.6 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Spizellomycetales Spizellomycetaceae Spizellomyces Spizellomyces punctatus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;