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contig_metadata

30 rows where bioproject = "PRJNA682078", tax_clade = "FCB group" and tax_phylum = "Gemmatimonadota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Gemmatimonadota · 30 ✖

tax_kingdom 1

tax_clade 1

  • FCB group · 30 ✖

bioproject 1

  • PRJNA682078 · 30 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4490402 4490402 PRJNA682078_P_NODE_298724_length_218_cov_4.248276_g296947_i0 PRJNA682078 298724 218 4.248276 9.26124168 uncultured Gemmatimonadales bacterium 412054 Bacteria Bacteria 276 1.05e-69   NTclustered gi|2874253755|emb|OY969695.1| 412054 g296947 i0 89.954 105.247706422018 219 15 99 6 1 215 343220 343005 MAG: uncultured Gemmatimonadales bacterium isolate MFD04967.bin.1.34 genome assembly, chromosome: 1 blastn 22944 276 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium
5763278 5763278 PRJNA682078_P_NODE_187205_length_270_cov_2.187817_g185428_i0 PRJNA682078 187205 270 2.187817 5.9071059 Longimicrobium sp. 2029185 Bacteria Bacteria 105 4.46e-24   NR HEX8451581.1 2029185 g185428 i0 61.6 1.91111111111111 86 32 94.4 1 14 268 244 329 HEX8451581.1 carboxypeptidase-like regulatory domain-containing protein [Longimicrobium sp.] diamond 516 105 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Longimicrobiia Longimicrobiales Longimicrobiaceae Longimicrobium Longimicrobium sp.
5763996 5763996 PRJNA682078_P_NODE_215025_length_254_cov_2.127072_g213248_i0 PRJNA682078 215025 254 2.127072 5.40276288 Gemmatimonadota bacterium 2026742 Bacteria Bacteria 296 9.65e-76   NTclustered gi|2107953857|gb|CP070792.1| 2026742 g213248 i0 88.048 123.287401574803 251 29 98 1 1 250 1095731 1095481 MAG: Gemmatimonadetes bacterium isolate bin1440 chromosome blastn 31315 296 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium
8311810 8311810 PRJNA682078_P_NODE_145347_length_299_cov_1.022124_g143570_i0 PRJNA682078 145347 299 1.022124 3.05615076 uncultured Gemmatimonadales bacterium 412054 Bacteria Bacteria 411 3.979999999999999e-110   NTclustered gi|2874253978|emb|OY970303.1| 412054 g143570 i0 93.478 73.2073578595318 276 18 92 0 24 299 1903839 1903564 MAG: uncultured Gemmatimonadales bacterium isolate MFD01275.bin.c.12 genome assembly, chromosome: 1 blastn 21889 411 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium
12140249 12140249 PRJNA682078_P_NODE_233090_length_250_cov_0.870056_g231313_i0 PRJNA682078 233090 250 0.870056 2.17514 Gemmatimonadaceae bacterium 2026741 Bacteria Bacteria 84.7 6.95e-17   NR HKG92382.1 2026741 g231313 i0 62.5 0.864 72 27 86.4 0 217 2 376 447 HKG92382.1 N-6 DNA methylase [Gemmatimonadaceae bacterium] diamond 216 84.7 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium
12653221 12653221 PRJNA682078_P_NODE_47750_length_495_cov_3.943128_g45985_i0 PRJNA682078 47750 495 3.943128 19.5184836 Gemmatimonas 173479 Bacteria Bacteria 579 1.7899999999999993e-160   NTclustered gi|470475286|ref|NR_076270.1| 173480 g45985 i0 87.897 44.769696969697 504 45 100 15 1 495 24 520 Gemmatimonas aurantiaca strain T-27 23S ribosomal RNA gene, complete sequence blastn 22161 579 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatimonas Gemmatimonas aurantiaca
13413554 13413554 PRJNA682078_P_NODE_185451_length_271_cov_2.313131_g183674_i0 PRJNA682078 185451 271 2.313131 6.26858501 Longimicrobium 1804994 Bacteria Bacteria 144 1.3e-39   NR HEU0054040.1 2029185 g183674 i0 84.3 4.92619926199262 89 14 98.5 0 3 269 116 204 HEU0054040.1 DUF1611 domain-containing protein [Longimicrobium sp.] diamond 1335 145 0.993103448275862 Bacteria FCB group Pseudomonadati Gemmatimonadota Longimicrobiia Longimicrobiales Longimicrobiaceae Longimicrobium Longimicrobium sp.
14688259 14688259 PRJNA682078_P_NODE_167932_length_282_cov_1.291866_g166155_i0 PRJNA682078 167932 282 1.291866 3.64306212 Gemmatimonas aurantiaca 173480 Bacteria Bacteria 516 7.67e-142   NTclustered gi|226088597|dbj|AP009153.1| 379066 g166155 i0 99.645 1 282 1 100 0 1 282 2745747 2745466 Gemmatimonas aurantiaca T-27 DNA, complete genome blastn 282 516 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatimonas Gemmatimonas aurantiaca
17235614 17235614 PRJNA682078_P_NODE_102574_length_348_cov_1.120000_g100798_i0 PRJNA682078 102574 348 1.12 3.8976 uncultured Gemmatimonadales bacterium 412054 Bacteria Bacteria 411 4.719999999999999e-110   NTclustered gi|2874253978|emb|OY970303.1| 412054 g100798 i0 88.136 244.011494252874 354 31 100 10 1 348 3486204 3485856 MAG: uncultured Gemmatimonadales bacterium isolate MFD01275.bin.c.12 genome assembly, chromosome: 1 blastn 84916 411 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium
18510138 18510138 PRJNA682078_P_NODE_120715_length_324_cov_2.338645_g118938_i0 PRJNA682078 120715 324 2.338645 7.5772098 Gemmatirosa kalamazoonensis 861299 Bacteria Bacteria 453 7.140000000000001e-123   NTclustered gi|575456455|gb|CP007128.1| 861299 g118938 i0 92 53.6759259259259 325 23 100 3 1 324 3043117 3043439 Gemmatirosa kalamazoonesis strain KBS708, complete genome blastn 17391 453 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatirosa Gemmatirosa kalamazoonensis
21063886 21063886 PRJNA682078_P_NODE_253097_length_246_cov_2.341040_g251320_i0 PRJNA682078 253097 246 2.34104 5.7589584 Gemmatimonas sp. 1962908 Bacteria Bacteria 74.7 2.07e-13   NR MEO7520700.1 1962908 g251320 i0 81.8 1.07317073170732 44 8 53.7 0 246 115 422 465 MEO7520700.1 pitrilysin family protein [Gemmatimonas sp.] diamond 264 74.7 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatimonas Gemmatimonas sp.
24885181 24885181 PRJNA682078_P_NODE_158460_length_288_cov_1.339535_g156683_i0 PRJNA682078 158460 288 1.339535 3.8578608 uncultured Gemmatimonadales bacterium 412054 Bacteria Bacteria 359 1.4e-94   NTclustered gi|2874253978|emb|OY970303.1| 412054 g156683 i0 89.31 297.086805555556 290 26 100 4 1 288 1902431 1902717 MAG: uncultured Gemmatimonadales bacterium isolate MFD01275.bin.c.12 genome assembly, chromosome: 1 blastn 85561 359 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium
26638911 26638911 PRJNA682078_P_NODE_69061_length_415_cov_1.839181_g67286_i0 PRJNA682078 69061 415 1.839181 7.63260115 Gemmatimonadota bacterium 2026742 Bacteria Bacteria 61.2 6.15e-8   NR MDB4948302.1 2026742 g67286 i0 31.2 0.997590361445783 138 88 96.1 3 17 415 63 198 MDB4948302.1 hypothetical protein [Gemmatimonadota bacterium] diamond 414 61.2 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium
26923954 26923954 PRJNA682078_P_NODE_259962_length_245_cov_1.936047_g258185_i0 PRJNA682078 259962 245 1.936047 4.74331515 Gemmatimonadaceae bacterium 2026741 Bacteria Bacteria 142 2.1199999999999996e-37   NR HEX5580654.1 2026741 g258185 i0 88.9 0.991836734693878 81 9 99.2 0 2 244 93 173 HEX5580654.1 elongation factor G [Gemmatimonadaceae bacterium] diamond 243 142 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium
27018782 27018782 PRJNA682078_P_NODE_181702_length_274_cov_0.960199_g179925_i0 PRJNA682078 181702 274 0.960199 2.63094526 Gemmatimonadota bacterium 2026742 Bacteria Bacteria 42.7 0.047   NR MEE9470725.1 2026742 g179925 i0 41.5 0.448905109489051 41 24 44.9 0 225 103 196 236 MEE9470725.1 hypothetical protein [Gemmatimonadota bacterium] diamond 123 42.7 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium
27050532 27050532 PRJNA682078_P_NODE_222602_length_251_cov_0.865169_g220825_i0 PRJNA682078 222602 251 0.865169 2.17157419 Longimicrobiaceae bacterium 3047548 Bacteria Bacteria 112 4.13e-29   NR HEV2149656.1 3047548 g220825 i0 64 0.896414342629482 75 27 89.6 0 21 245 67 141 HEV2149656.1 recombinase family protein [Longimicrobiaceae bacterium] diamond 225 112 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Longimicrobiia Longimicrobiales Longimicrobiaceae   Longimicrobiaceae bacterium
27461415 27461415 PRJNA682078_P_NODE_177423_length_276_cov_1.517241_g175646_i0 PRJNA682078 177423 276 1.517241 4.18758516 Gemmatimonadaceae bacterium 2026741 Bacteria Bacteria 107 1.2099999999999999e-24   NR HJQ10304.1 2026741 g175646 i0 62.6 0.989130434782609 91 33 98.9 1 3 275 239 328 HJQ10304.1 Ig-like domain-containing protein [Gemmatimonadaceae bacterium] diamond 273 107 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium
27492925 27492925 PRJNA682078_P_NODE_245803_length_248_cov_0.880000_g244026_i0 PRJNA682078 245803 248 0.88 2.1824 Gemmatimonas sp. UBA7669 1946568 Bacteria Bacteria 141 6.8e-37   NR WP_291156868.1 1946568 g244026 i0 97.6 0.991935483870968 82 2 99.2 0 247 2 70 151 WP_291156868.1 choice-of-anchor Q domain-containing protein [Gemmatimonas sp. UBA7669] diamond 246 141 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatimonas Gemmatimonas sp. UBA7669
28136186 28136186 PRJNA682078_P_NODE_254585_length_246_cov_1.242775_g252808_i0 PRJNA682078 254585 246 1.242775 3.0572265 Pseudomonadati 3379134 Bacteria Bacteria 83.6 1.55e-16   NR HSM61894.1 2910168 g252808 i0 57.3 4.64634146341463 82 31 95.1 2 13 246 193 274 HSM61894.1 hypothetical protein [Longimicrobiales bacterium] diamond 1143 83.6 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Longimicrobiia Longimicrobiales     Longimicrobiales bacterium
28282002 28282002 PRJNA682078_P_NODE_262146_length_245_cov_0.895349_g260369_i0 PRJNA682078 262146 245 0.895349 2.19360505 Gemmatimonadota bacterium 2026742 Bacteria Bacteria 43.5 0.02   NR MBI4502340.1 2026742 g260369 i0 33.8 0.979591836734694 80 51 98 1 6 245 337 414 MBI4502340.1 flippase [Gemmatimonadota bacterium] diamond 240 43.5 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium
28376836 28376836 PRJNA682078_P_NODE_191546_length_268_cov_1.220513_g189769_i0 PRJNA682078 191546 268 1.220513 3.27097484 Gemmatimonadota bacterium 2026742 Bacteria Bacteria 45.4 0.00546   NR MEO8139057.1 2026742 g189769 i0 34.2 1.51119402985075 73 47 80.6 1 1 216 79 151 MEO8139057.1 glycosyltransferase family 4 protein [Gemmatimonadota bacterium] diamond 405 45.4 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium
29734320 29734320 PRJNA682078_P_NODE_221230_length_251_cov_1.500000_g219453_i0 PRJNA682078 221230 251 1.5 3.765 Gemmatimonadales bacterium 2448054 Bacteria Bacteria 50.4 7.01e-5   NR MDZ4259450.1 2448054 g219453 i0 69 0.657370517928287 29 9 34.7 0 250 164 258 286 MDZ4259450.1 GIY-YIG nuclease family protein [Gemmatimonadales bacterium] diamond 165 50.4 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     Gemmatimonadales bacterium
30019063 30019063 PRJNA682078_P_NODE_235591_length_249_cov_0.875000_g233814_i0 PRJNA682078 235591 249 0.875 2.17875 Gemmatimonadota bacterium 2026742 Bacteria Bacteria 41.2 0.0277   NR MBX6366053.1 2026742 g233814 i0 44 0.602409638554217 50 27 60.2 1 97 246 31 79 MBX6366053.1 hypothetical protein [Gemmatimonadota bacterium] diamond 150 41.2 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium
30619137 30619137 PRJNA682078_P_NODE_253773_length_246_cov_1.670520_g251996_i0 PRJNA682078 253773 246 1.67052 4.1094792 Gemmatimonadaceae bacterium 2026741 Bacteria Bacteria 75.5 1.09e-13   NR MEO5816393.1 2026741 g251996 i0 52.8 0.878048780487805 72 34 87.8 0 27 242 112 183 MEO5816393.1 FAD-dependent oxidoreductase [Gemmatimonadaceae bacterium] diamond 216 75.5 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium
31630660 31630660 PRJNA682078_P_NODE_244896_length_248_cov_0.880000_g243119_i0 PRJNA682078 244896 248 0.88 2.1824 Gemmatimonadota bacterium 2026742 Bacteria Bacteria 42.4 0.0489   NR MBT3344415.1 2026742 g243119 i0 63.3 0.362903225806452 30 11 36.3 0 91 2 1 30 MBT3344415.1 phytanoyl-CoA dioxygenase family protein [Gemmatimonadota bacterium] diamond 90 42.4 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium
32073600 32073600 PRJNA682078_P_NODE_181158_length_274_cov_1.313433_g179381_i0 PRJNA682078 181158 274 1.313433 3.59880642 Gemmatimonadota bacterium 2026742 Bacteria Bacteria 42.7 0.0428   NR PYP18047.1 2026742 g179381 i0 40.5 0.45985401459854 42 23 46 1 122 247 23 62 PYP18047.1 MAG: polyisoprenoid-binding protein [Gemmatimonadota bacterium] diamond 126 42.7 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium
32148637 32148637 PRJNA682078_P_NODE_264618_length_245_cov_0.895349_g262841_i0 PRJNA682078 264618 245 0.895349 2.19360505 Pseudomonadati 3379134 Bacteria Bacteria 139 8.239999999999999e-40   NR HEX5575492.1 2448054 g262841 i0 80.2 2.96326530612245 81 15 99.2 1 245 3 73 152 HEX5575492.1 cytochrome P460 family protein [Gemmatimonadales bacterium] diamond 726 139 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     Gemmatimonadales bacterium
32232065 32232065 PRJNA682078_P_NODE_242698_length_248_cov_0.880000_g240921_i0 PRJNA682078 242698 248 0.88 2.1824 Gemmatimonadales bacterium 2448054 Bacteria Bacteria 73.9 5.66e-15   NR TFH60877.1 2448054 g240921 i0 56.4 0.665322580645161 55 24 66.5 0 247 83 37 91 TFH60877.1 MAG: hypothetical protein E4G90_09915 [Gemmatimonadales bacterium] diamond 165 73.9 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     Gemmatimonadales bacterium
32654098 32654098 PRJNA682078_P_NODE_250280_length_247_cov_0.885057_g248503_i0 PRJNA682078 250280 247 0.885057 2.18609079 Bacteria 2 Bacteria Bacteria 135 9.799999999999999e-35   NR MDP1860843.1 2026741 g248503 i0 81.5 2.95141700404858 81 15 98.4 0 1 243 334 414 MDP1860843.1 SusC/RagA family TonB-linked outer membrane protein [Gemmatimonadaceae bacterium] diamond 729 135 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium
32674056 32674056 PRJNA682078_P_NODE_207880_length_258_cov_1.956757_g206103_i0 PRJNA682078 207880 258 1.956757 5.04843306 Gemmatimonadaceae bacterium 2026741 Bacteria Bacteria 43.1 0.0339   NR HWJ23287.1 2026741 g206103 i0 38.8 1.46511627906977 67 37 75.6 2 222 28 594 658 HWJ23287.1 cytochrome c oxidase subunit I [Gemmatimonadaceae bacterium] diamond 378 43.1 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;