RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA682078", tax_clade = "FCB group" and tax_phylum = "Candidatus Hydrogenedentota"

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tax_superkingdom 1

tax_phylum 1

  • Candidatus Hydrogenedentota · 3 ✖

tax_kingdom 1

tax_clade 1

  • FCB group · 3 ✖

bioproject 1

  • PRJNA682078 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27998177 27998177 PRJNA682078_P_NODE_113925_length_333_cov_0.865385_g112148_i0 PRJNA682078 113925 333 0.865385 2.88173205 Candidatus Hydrogenedentota bacterium 2030809 Bacteria Bacteria 82.8 9.64e-16   NR HOH34822.1 2030809 g112148 i0 44.5 3.05405405405405 119 49 93.7 5 22 333 393 509 HOH34822.1 DUF3160 domain-containing protein [Candidatus Hydrogenedentota bacterium] diamond 1017 82.8 1 Bacteria FCB group Pseudomonadati Candidatus Hydrogenedentota         Candidatus Hydrogenedentota bacterium
28503231 28503231 PRJNA682078_P_NODE_179127_length_275_cov_1.519802_g177350_i0 PRJNA682078 179127 275 1.519802 4.1794555 Candidatus Hydrogenedentota bacterium 2030809 Bacteria Bacteria 119 4.86e-29   NR MFM1918838.1 2030809 g177350 i0 65.9 0.992727272727273 91 31 99.3 0 275 3 496 586 MFM1918838.1 hypothetical protein [Candidatus Hydrogenedentota bacterium] diamond 273 119 1 Bacteria FCB group Pseudomonadati Candidatus Hydrogenedentota         Candidatus Hydrogenedentota bacterium
32485102 32485102 PRJNA682078_P_NODE_226279_length_251_cov_0.865169_g224502_i0 PRJNA682078 226279 251 0.865169 2.17157419 Candidatus Hydrogenedentota bacterium 2030809 Bacteria Bacteria 124 6.109999999999999e-31   NR MFM1920487.1 2030809 g224502 i0 76.6 0.920318725099602 77 18 92 0 232 2 339 415 MFM1920487.1 hypothetical protein [Candidatus Hydrogenedentota bacterium] diamond 231 124 1 Bacteria FCB group Pseudomonadati Candidatus Hydrogenedentota         Candidatus Hydrogenedentota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;