RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA682078" and tax_clade = "Apusozoa"

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analysis 2

tax_superkingdom 1

tax_clade 1

  • Apusozoa · 2 ✖

bioproject 1

  • PRJNA682078 · 2 ✖

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
24886415 24886415 PRJNA682078_P_NODE_208500_length_258_cov_1.443243_g206723_i0 PRJNA682078 208500 258 1.443243 3.72356694 Thecamonas trahens 529818 Root_unresolved Root_unresolved 54.7 0.007   NTclustered gi|923131822|ref|XM_013903923.1| 461836 g206723 i0 92.308 0.151162790697674 39 1 15 2 62 100 590 554 Thecamonas trahens ATCC 50062 uncharacterized protein (AMSG_02458), partial mRNA blastn 39 54.7 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens
32180356 32180356 PRJNA682078_P_NODE_231758_length_250_cov_0.870056_g229981_i0 PRJNA682078 231758 250 0.870056 2.17514 root 1 Root_unresolved Root_unresolved 80.9 5.44e-16   NR XP_013761608.1 461836 g229981 i0 56.7 2.544 67 28 79.2 1 199 2 63 129 XP_013761608.1 uncharacterized protein AMSG_01558 [Thecamonas trahens ATCC 50062] diamond 636 80.9 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;