RNAquarium Metadata Server
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contig_metadata

8 rows where bioproject = "PRJNA682078", tax_clade = "Amoebozoa" and tax_phylum = "Tubulinea"

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tax_superkingdom 1

tax_phylum 1

  • Tubulinea · 8 ✖

tax_clade 1

  • Amoebozoa · 8 ✖

bioproject 1

  • PRJNA682078 · 8 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
663891 663891 PRJNA682078_P_NODE_90941_length_366_cov_2.023891_g89166_i0 PRJNA682078 90941 366 2.023891 7.40744106 Tubulinea sp. 4388 1216001 Tubulinea other_Eukaryota 676 0   NTclustered gi|399764265|gb|JQ271776.1| 1216001 g89166 i0 100 79.6830601092896 366 0 100 0 1 366 1256 891 Tubulinea sp. 4388 18S ribosomal RNA gene, partial sequence blastn 29164 676 1 Eukaryota Amoebozoa   Tubulinea         Tubulinea sp. 4388
7036744 7036744 PRJNA682078_P_NODE_125426_length_319_cov_1.402439_g123649_i0 PRJNA682078 125426 319 1.402439 4.47378041 Tubulinea sp. 4388 1216001 Tubulinea other_Eukaryota 590 5.1299999999999986e-164   NTclustered gi|399764265|gb|JQ271776.1| 1216001 g123649 i0 100 43.2601880877743 319 0 100 0 1 319 570 252 Tubulinea sp. 4388 18S ribosomal RNA gene, partial sequence blastn 13800 590 1 Eukaryota Amoebozoa   Tubulinea         Tubulinea sp. 4388
8827444 8827444 PRJNA682078_P_NODE_98127_length_354_cov_2.587189_g96351_i0 PRJNA682078 98127 354 2.587189 9.15864906 Vermamoeba 1260114 Tubulinea other_Eukaryota 632 9.399999999999998e-177   NTclustered gi|909719645|gb|KT185625.1| 5778 g96351 i0 98.87 77.1271186440678 354 4 100 0 1 354 4885 5238 Vermamoeba vermiformis isolate 1 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S ribosomal RNA gene, complete sequence blastn 27303 632 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
13926013 13926013 PRJNA682078_P_NODE_140411_length_303_cov_4.034783_g138634_i0 PRJNA682078 140411 303 4.034783 12.22539249 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 538 1.7799999999999995e-148   NTclustered gi|909719645|gb|KT185625.1| 5778 g138634 i0 98.68 30.8415841584158 303 4 100 0 1 303 3865 3563 Vermamoeba vermiformis isolate 1 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S ribosomal RNA gene, complete sequence blastn 9345 538 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
17241606 17241606 PRJNA682078_P_NODE_78814_length_390_cov_20.031546_g77039_i0 PRJNA682078 78814 390 20.031546 78.1230294 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 665 0   NTclustered gi|909719645|gb|KT185625.1| 5778 g77039 i0 99.187 28.1846153846154 369 3 95 0 22 390 7103 6735 Vermamoeba vermiformis isolate 1 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S ribosomal RNA gene, complete sequence blastn 10992 665 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
22848911 22848911 PRJNA682078_P_NODE_107798_length_340_cov_2.438202_g106021_i0 PRJNA682078 107798 340 2.438202 8.2898868 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 243 1.78e-59   NTclustered gi|300078497|gb|GU001159.1| 200886 g106021 i0 83.396 79.6588235294118 265 41 77 2 79 340 3759 4023 Rhizamoeba saxonica 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 27084 243 1 Eukaryota Amoebozoa   Tubulinea Elardia Leptomyxida Flabellulidae Rhizamoeba Rhizamoeba saxonica
22851348 22851348 PRJNA682078_P_NODE_52818_length_471_cov_2.206030_g51048_i0 PRJNA682078 52818 471 2.20603 10.3904013 Vermamoeba 1260114 Tubulinea other_Eukaryota 763 0   NTclustered gi|909719645|gb|KT185625.1| 5778 g51048 i0 95.966 47.8556263269639 471 17 99 2 2 471 5778 5309 Vermamoeba vermiformis isolate 1 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S ribosomal RNA gene, complete sequence blastn 22540 769 0.992197659297789 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
24889643 24889643 PRJNA682078_P_NODE_73040_length_404_cov_5.510574_g71265_i0 PRJNA682078 73040 404 5.510574 22.26271896 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 675 0   NTclustered gi|300078496|gb|GU001158.1| 5778 g71265 i0 96.782 26.2623762376238 404 13 100 0 1 404 1613 1210 Hartmannella vermiformis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 10610 675 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;