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contig_metadata

24 rows where bioproject = "PRJNA682078" and tax_clade = "Amoebozoa"

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tax_phylum 3

analysis 2

tax_superkingdom 1

tax_clade 1

  • Amoebozoa · 24 ✖

bioproject 1

  • PRJNA682078 · 24 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
662628 662628 PRJNA682078_P_NODE_36221_length_566_cov_2.772819_g34467_i0 PRJNA682078 36221 566 2.772819 15.69415554 Protostelium mycophagum 472931 Evosea other_Eukaryota 1035 0   NTclustered gi|262262921|gb|FJ766464.1| 472931 g34467 i0 99.647 62.9116607773852 566 2 100 0 1 566 560 1125 Protostelium mycophagum strain KA-T15-2 small subunit ribosomal RNA gene, partial sequence blastn 35608 1035 1 Eukaryota Amoebozoa   Evosea Variosea Protosteliida Protosteliaceae Protostelium Protostelium mycophagum
663891 663891 PRJNA682078_P_NODE_90941_length_366_cov_2.023891_g89166_i0 PRJNA682078 90941 366 2.023891 7.40744106 Tubulinea sp. 4388 1216001 Tubulinea other_Eukaryota 676 0   NTclustered gi|399764265|gb|JQ271776.1| 1216001 g89166 i0 100 79.6830601092896 366 0 100 0 1 366 1256 891 Tubulinea sp. 4388 18S ribosomal RNA gene, partial sequence blastn 29164 676 1 Eukaryota Amoebozoa   Tubulinea         Tubulinea sp. 4388
3725964 3725964 PRJNA682078_P_NODE_72743_length_405_cov_2.307229_g70968_i0 PRJNA682078 72743 405 2.307229 9.34427745 Cochliopodium 313557 Discosea other_Eukaryota 749 0   NTclustered gi|659103902|gb|KJ569713.1| 313997 g70968 i0 100 57.4222222222222 405 0 100 0 1 405 1031 627 Cochliopodium minus clone 1101 18S ribosomal RNA gene, partial sequence blastn 23256 749 1 Eukaryota Amoebozoa   Discosea   Himatismenida Cochliopodiidae Cochliopodium Cochliopodium minus
6276351 6276351 PRJNA682078_P_NODE_177445_length_276_cov_1.517241_g175668_i0 PRJNA682078 177445 276 1.517241 4.18758516 Planoprotostelium fungivorum 1890364 Evosea other_Eukaryota 84.7 1.46e-17   NR PRP88657.1 1890364 g175668 i0 77.6 0.532608695652174 49 11 53.3 0 130 276 48 96 PRP88657.1 putative RAC GTPase [Planoprotostelium fungivorum] diamond 147 84.7 1 Eukaryota Amoebozoa   Evosea Variosea Cavosteliida Cavosteliaceae Planoprotostelium Planoprotostelium fungivorum
7036744 7036744 PRJNA682078_P_NODE_125426_length_319_cov_1.402439_g123649_i0 PRJNA682078 125426 319 1.402439 4.47378041 Tubulinea sp. 4388 1216001 Tubulinea other_Eukaryota 590 5.1299999999999986e-164   NTclustered gi|399764265|gb|JQ271776.1| 1216001 g123649 i0 100 43.2601880877743 319 0 100 0 1 319 570 252 Tubulinea sp. 4388 18S ribosomal RNA gene, partial sequence blastn 13800 590 1 Eukaryota Amoebozoa   Tubulinea         Tubulinea sp. 4388
8827444 8827444 PRJNA682078_P_NODE_98127_length_354_cov_2.587189_g96351_i0 PRJNA682078 98127 354 2.587189 9.15864906 Vermamoeba 1260114 Tubulinea other_Eukaryota 632 9.399999999999998e-177   NTclustered gi|909719645|gb|KT185625.1| 5778 g96351 i0 98.87 77.1271186440678 354 4 100 0 1 354 4885 5238 Vermamoeba vermiformis isolate 1 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S ribosomal RNA gene, complete sequence blastn 27303 632 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
9588973 9588973 PRJNA682078_P_NODE_216608_length_253_cov_2.805556_g214831_i0 PRJNA682078 216608 253 2.805556 7.09805668 Stenamoeba sp. HP839 1215627 Discosea other_Eukaryota 460 3.2199999999999996e-125   NTclustered gi|399764210|gb|JQ271721.1| 1215627 g214831 i0 99.605 48.5217391304348 253 0 100 1 1 253 1607 1858 Stenamoeba sp. HP839 18S ribosomal RNA gene, partial sequence blastn 12276 460 1 Eukaryota Amoebozoa   Discosea   Longamoebia Thecamoebida Stenamoeba Stenamoeba sp. HP839
10862300 10862300 PRJNA682078_P_NODE_130369_length_314_cov_0.941909_g128592_i0 PRJNA682078 130369 314 0.941909 2.95759426 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 292 1.59e-74   NTclustered gi|300078498|gb|GU001160.1| 5755 g128592 i0 91.743 1.91082802547771 218 7 67 9 101 309 6187 6402 Acanthamoeba castellanii 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 600 292 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
10866415 10866415 PRJNA682078_P_NODE_295129_length_235_cov_2.129630_g293352_i0 PRJNA682078 295129 235 2.12963 5.0046305 Physarum cinereum 289951 Evosea other_Eukaryota 418 1.8e-112   NTclustered gi|374255699|emb|HE614599.1| 289951 g293352 i0 98.723 95.2595744680851 235 3 100 0 1 235 355 121 Physarum cinereum partial 18S rRNA gene, strain Idn-2 blastn 22386 418 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Physariida Physaraceae Physarum Physarum cinereum
13926013 13926013 PRJNA682078_P_NODE_140411_length_303_cov_4.034783_g138634_i0 PRJNA682078 140411 303 4.034783 12.22539249 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 538 1.7799999999999995e-148   NTclustered gi|909719645|gb|KT185625.1| 5778 g138634 i0 98.68 30.8415841584158 303 4 100 0 1 303 3865 3563 Vermamoeba vermiformis isolate 1 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S ribosomal RNA gene, complete sequence blastn 9345 538 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
13928213 13928213 PRJNA682078_P_NODE_73551_length_403_cov_1.845455_g71776_i0 PRJNA682078 73551 403 1.845455 7.43718365 Protostelium 472930 Evosea other_Eukaryota 745 0   NTclustered gi|262262921|gb|FJ766464.1| 472931 g71776 i0 100 23.5856079404466 403 0 100 0 1 403 1657 1255 Protostelium mycophagum strain KA-T15-2 small subunit ribosomal RNA gene, partial sequence blastn 9505 745 1 Eukaryota Amoebozoa   Evosea Variosea Protosteliida Protosteliaceae Protostelium Protostelium mycophagum
15964449 15964449 PRJNA682078_P_NODE_265733_length_245_cov_0.895349_g263956_i0 PRJNA682078 265733 245 0.895349 2.19360505 Planoprotostelium fungivorum 1890364 Evosea other_Eukaryota 72.8 1.02e-12   NR PRP87031.1 1890364 g263956 i0 52.6 2.93877551020408 78 36 95.5 1 10 243 2338 2414 PRP87031.1 hypothetical protein PROFUN_04767 [Planoprotostelium fungivorum] diamond 720 72.8 1 Eukaryota Amoebozoa   Evosea Variosea Cavosteliida Cavosteliaceae Planoprotostelium Planoprotostelium fungivorum
16474315 16474315 PRJNA682078_P_NODE_109353_length_338_cov_2.879245_g107576_i0 PRJNA682078 109353 338 2.879245 9.7318481 Protostelium 472930 Evosea other_Eukaryota 619 6.969999999999999e-173   NTclustered gi|262262921|gb|FJ766464.1| 472931 g107576 i0 99.704 60.387573964497 338 1 100 0 1 338 341 4 Protostelium mycophagum strain KA-T15-2 small subunit ribosomal RNA gene, partial sequence blastn 20411 625 0.9904 Eukaryota Amoebozoa   Evosea Variosea Protosteliida Protosteliaceae Protostelium Protostelium mycophagum
17241606 17241606 PRJNA682078_P_NODE_78814_length_390_cov_20.031546_g77039_i0 PRJNA682078 78814 390 20.031546 78.1230294 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 665 0   NTclustered gi|909719645|gb|KT185625.1| 5778 g77039 i0 99.187 28.1846153846154 369 3 95 0 22 390 7103 6735 Vermamoeba vermiformis isolate 1 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S ribosomal RNA gene, complete sequence blastn 10992 665 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
18512979 18512979 PRJNA682078_P_NODE_234815_length_249_cov_1.250000_g233038_i0 PRJNA682078 234815 249 1.25 3.1125 Physarum albescens 289948 Evosea other_Eukaryota 425 1.15e-114   NTclustered gi|381139256|emb|HE655073.1| 289948 g233038 i0 97.59 38.6706827309237 249 4 100 1 1 249 1305 1059 Physarum albescens partial 28S rRNA gene, isolate Fr-K2 blastn 9629 425 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Physariida Physaraceae Physarum Physarum albescens
19023192 19023192 PRJNA682078_P_NODE_103535_length_346_cov_2.494505_g101759_i0 PRJNA682078 103535 346 2.494505 8.6309873 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 597 3.349999999999999e-166   NTclustered gi|441475833|emb|FN562425.4| 688089 g101759 i0 98.525 14.8323699421965 339 4 98 1 1 338 578 240 Amoebozoa sp. SZA36 18S rRNA gene, isolate SZA36 blastn 5132 597 1 Eukaryota Amoebozoa             Amoebozoa sp. SZA36
19025078 19025078 PRJNA682078_P_NODE_266735_length_244_cov_1.801170_g264958_i0 PRJNA682078 266735 244 1.80117 4.3948548 Trichiida 208471 Evosea other_Eukaryota 257 4.35e-64   NTclustered gi|501417069|gb|JX481283.1| 1334516 g264958 i0 86.307 98.5491803278689 241 28 98 5 1 240 1075 839 Arcyria marginoundulata voucher MM37736 18S ribosomal RNA gene, partial sequence blastn 24046 259 0.992277992277992 Eukaryota Amoebozoa   Evosea Eumycetozoa Trichiida Trichiidae Arcyria Arcyria marginoundulata
22337816 22337816 PRJNA682078_P_NODE_217758_length_253_cov_1.344444_g215981_i0 PRJNA682078 217758 253 1.344444 3.40144332 Fuligo septica 159720 Evosea other_Eukaryota 350 7.27e-92   NTclustered gi|37515398|emb|AJ584697.1| 159720 g215981 i0 91.7 69.1778656126482 253 19 100 2 1 253 7497 7747 Fuligo septica 18S rRNA gene, ITS1, 5.8S rRNA gene, ITS2 and 28S rRNA gene, isolate NY-1 blastn 17502 350 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Physariida Physaraceae Fuligo Fuligo septica
22848911 22848911 PRJNA682078_P_NODE_107798_length_340_cov_2.438202_g106021_i0 PRJNA682078 107798 340 2.438202 8.2898868 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 243 1.78e-59   NTclustered gi|300078497|gb|GU001159.1| 200886 g106021 i0 83.396 79.6588235294118 265 41 77 2 79 340 3759 4023 Rhizamoeba saxonica 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 27084 243 1 Eukaryota Amoebozoa   Tubulinea Elardia Leptomyxida Flabellulidae Rhizamoeba Rhizamoeba saxonica
22851348 22851348 PRJNA682078_P_NODE_52818_length_471_cov_2.206030_g51048_i0 PRJNA682078 52818 471 2.20603 10.3904013 Vermamoeba 1260114 Tubulinea other_Eukaryota 763 0   NTclustered gi|909719645|gb|KT185625.1| 5778 g51048 i0 95.966 47.8556263269639 471 17 99 2 2 471 5778 5309 Vermamoeba vermiformis isolate 1 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S ribosomal RNA gene, complete sequence blastn 22540 769 0.992197659297789 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
23611803 23611803 PRJNA682078_P_NODE_153819_length_291_cov_1.412844_g152042_i0 PRJNA682078 153819 291 1.412844 4.11137604 Physarum polycephalum 5791 Evosea other_Eukaryota 270 6.8399999999999985e-68   NTclustered gi|3221|emb|V01159.1| 5791 g152042 i0 86.694 38.766323024055 248 27 84 4 12 255 1088 1333 Physarum polycephalum gene encoding 5.8S rRNA and 26S rRNA blastn 11281 270 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Physariida Physaraceae Physarum Physarum polycephalum
23615150 23615150 PRJNA682078_P_NODE_290019_length_241_cov_0.916667_g288242_i0 PRJNA682078 290019 241 0.916667 2.20916747 Physarum cinereum 289951 Evosea other_Eukaryota 429 8.58e-116   NTclustered gi|374255699|emb|HE614599.1| 289951 g288242 i0 98.755 98.2406639004149 241 3 100 0 1 241 558 318 Physarum cinereum partial 18S rRNA gene, strain Idn-2 blastn 23676 429 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Physariida Physaraceae Physarum Physarum cinereum
24889643 24889643 PRJNA682078_P_NODE_73040_length_404_cov_5.510574_g71265_i0 PRJNA682078 73040 404 5.510574 22.26271896 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 675 0   NTclustered gi|300078496|gb|GU001158.1| 5778 g71265 i0 96.782 26.2623762376238 404 13 100 0 1 404 1613 1210 Hartmannella vermiformis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 10610 675 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
32894516 32894516 PRJNA682078_P_NODE_232840_length_250_cov_0.870056_g231063_i0 PRJNA682078 232840 250 0.870056 2.17514 Planoprotostelium fungivorum 1890364 Evosea other_Eukaryota 146 4.56e-41   NR PRP79382.1 1890364 g231063 i0 78 2.94 82 17 97.2 1 245 3 62 143 PRP79382.1 hypothetical protein PROFUN_12932, partial [Planoprotostelium fungivorum] diamond 735 146 1 Eukaryota Amoebozoa   Evosea Variosea Cavosteliida Cavosteliaceae Planoprotostelium Planoprotostelium fungivorum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;