RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA681861", tax_kingdom = "Pseudomonadati" and tax_phylum = "Myxococcota"

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tax_superkingdom 1

tax_phylum 1

  • Myxococcota · 3 ✖

tax_kingdom 1

  • Pseudomonadati · 3 ✖

bioproject 1

  • PRJNA681861 · 3 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
11375021 11375021 PRJNA681861_P_NODE_9729_length_607_cov_16.996540_g7869_i0 PRJNA681861 9729 607 16.99654 103.1689978 Haliangium 162027 Bacteria Bacteria 935 0   NTclustered gi|470485361|ref|NR_076697.1| 80816 g7869 i0 94.417 157.576606260297 609 32 100 2 1 607 537 1145 Haliangium ochraceum strain SMP-2 23S ribosomal RNA gene, complete sequence blastn 95649 935 1 Bacteria   Pseudomonadati Myxococcota   Haliangiales Kofleriaceae Haliangium Haliangium ochraceum
16474183 16474183 PRJNA681861_P_NODE_44753_length_162_cov_8.263158_g42653_i0 PRJNA681861 44753 162 8.263158 13.38631596 root 1 Root_unresolved Root_unresolved 198 1.64e-46   NTclustered gi|470485361|ref|NR_076697.1| 80816 g42653 i0 91.156 138.08024691358 147 12 91 1 1 147 1786 1931 Haliangium ochraceum strain SMP-2 23S ribosomal RNA gene, complete sequence blastn 22369 200 0.99 Bacteria   Pseudomonadati Myxococcota   Haliangiales Kofleriaceae Haliangium Haliangium ochraceum
17235555 17235555 PRJNA681861_P_NODE_33814_length_197_cov_1.964286_g31714_i0 PRJNA681861 33814 197 1.964286 3.86964342 Myxococcales bacterium 2026763 Bacteria Bacteria 124 3.5599999999999995e-24   NTclustered gi|2258824976|gb|CP060221.1| 2026763 g31714 i0 89.899 3.46700507614213 99 7 49 3 1 97 1313728 1313825 MAG: Myxococcales bacterium isolate HK-STAS-MYXO-35 chromosome, complete genome blastn 683 124 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales     Myxococcales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;