RNAquarium Metadata Server
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contig_metadata

10 rows where bioproject = "PRJNA681861" and tax_clade = "PVC group"

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tax_phylum 2

tax_superkingdom 1

tax_kingdom 1

tax_clade 1

  • PVC group · 10 ✖

bioproject 1

  • PRJNA681861 · 10 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7036092 7036092 PRJNA681861_P_NODE_12326_length_493_cov_3.000000_g10325_i0 PRJNA681861 12326 493 3 14.79 Gemmataceae bacterium 2052164 Bacteria Bacteria 555 3.009999999999999e-153   NTclustered gi|2063814025|emb|LR586051.1| 2052164 g10325 i0 87.149 75.4766734279919 498 53 100 11 1 493 318927 319418 Gemmata bacterium CJuql4 whole genome assembly and annotation blastn 37210 555 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Gemmatales Gemmataceae   Gemmataceae bacterium
11375000 11375000 PRJNA681861_P_NODE_25149_length_254_cov_4.733333_g23049_i0 PRJNA681861 25149 254 4.733333 12.02266582 Planctomycetia 203683 Bacteria Bacteria 307 4.4600000000000006e-79   NTclustered gi|1804913728|emb|LR593887.1| 692036 g23049 i0 93.75 115.527559055118 208 7 82 3 47 254 2737113 2736912 Tuwongella immobilis isolate MBLW1 genome assembly, chromosome: 1 blastn 29344 309 0.993527508090615 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Gemmatales Gemmataceae Tuwongella Tuwongella immobilis
12650701 12650701 PRJNA681861_P_NODE_19230_length_328_cov_5.983278_g17132_i0 PRJNA681861 19230 328 5.983278 19.62515184 Gemmataceae 1914233 Bacteria Bacteria 278 4.68e-70   NTclustered gi|1727537522|gb|CP042911.1| 114 g17132 i0 92.784 96.3780487804878 194 10 59 2 89 282 2022723 2022912 Gemmata obscuriglobus strain DSM 5831 chromosome, complete genome blastn 31612 279 0.996415770609319 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Gemmatales Gemmataceae Gemmata Gemmata obscuriglobus
14686600 14686600 PRJNA681861_P_NODE_10652_length_563_cov_5.571161_g8724_i0 PRJNA681861 10652 563 5.571161 31.36563643 Urbifossiella limnaea 2528023 Bacteria Bacteria 713 0   NTclustered gi|1712585314|gb|CP036273.1| 2528023 g8724 i0 89.558 115.554174067496 565 55 100 4 1 563 4211994 4212556 Urbifossiella limnaea strain ETA_A1 chromosome, complete genome blastn 65057 713 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Gemmatales Gemmataceae Urbifossiella Urbifossiella limnaea
15960282 15960282 PRJNA681861_P_NODE_10893_length_551_cov_3.848659_g8947_i0 PRJNA681861 10893 551 3.848659 21.20611109 uncultured Parachlamydiaceae bacterium 464461 Bacteria Bacteria 285 4.909999999999999e-72   NTclustered gi|2874253811|emb|OY969795.1| 464461 g8947 i0 90.783 52.7477313974592 217 15 39 4 311 525 654340 654553 MAG: uncultured Parachlamydiaceae bacterium isolate MFD05502.bin.c.3 genome assembly, chromosome: 1 blastn 29064 285 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae   uncultured Parachlamydiaceae bacterium
18509658 18509658 PRJNA681861_P_NODE_9835_length_601_cov_3.762238_g7965_i0 PRJNA681861 9835 601 3.762238 22.61105038 uncultured Parachlamydiaceae bacterium 464461 Bacteria Bacteria 350 1.88e-91   NTclustered gi|2874253811|emb|OY969795.1| 464461 g7965 i0 90.672 47.4226289517471 268 18 44 6 27 291 654553 654290 MAG: uncultured Parachlamydiaceae bacterium isolate MFD05502.bin.c.3 genome assembly, chromosome: 1 blastn 28501 350 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae   uncultured Parachlamydiaceae bacterium
19784491 19784491 PRJNA681861_P_NODE_14276_length_432_cov_2.205955_g12212_i0 PRJNA681861 14276 432 2.205955 9.5297256 uncultured Parachlamydiaceae bacterium 464461 Bacteria Bacteria 187 1.1e-42   NTclustered gi|2874253811|emb|OY969795.1| 464461 g12212 i0 87.425 40.5717592592593 167 16 38 5 142 305 2058887 2059051 MAG: uncultured Parachlamydiaceae bacterium isolate MFD05502.bin.c.3 genome assembly, chromosome: 1 blastn 17527 187 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae   uncultured Parachlamydiaceae bacterium
19784493 19784493 PRJNA681861_P_NODE_16136_length_388_cov_2.247911_g14047_i0 PRJNA681861 16136 388 2.247911 8.72189468 uncultured Parachlamydiaceae bacterium 464461 Bacteria Bacteria 189 2.7099999999999992e-43   NTclustered gi|2874253811|emb|OY969795.1| 464461 g14047 i0 87.879 52.5618556701031 165 15 42 5 86 247 2059049 2058887 MAG: uncultured Parachlamydiaceae bacterium isolate MFD05502.bin.c.3 genome assembly, chromosome: 1 blastn 20394 189 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae   uncultured Parachlamydiaceae bacterium
22334913 22334913 PRJNA681861_P_NODE_12258_length_496_cov_3.593148_g10261_i0 PRJNA681861 12258 496 3.593148 17.82201408 uncultured Gemmataceae bacterium 1914239 Bacteria Bacteria 250 1.6e-61   NTclustered gi|2874253749|emb|OY969623.1| 1914239 g10261 i0 92.135 67.491935483871 178 13 90 1 169 345 7050772 7050595 MAG: uncultured Gemmataceae bacterium isolate MFD06742.bin.c.1 genome assembly, chromosome: 1 blastn 33476 250 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Gemmatales Gemmataceae   uncultured Gemmataceae bacterium
22334931 22334931 PRJNA681861_P_NODE_32998_length_200_cov_3.549708_g30898_i0 PRJNA681861 32998 200 3.549708 7.099416 uncultured Gemmataceae bacterium 1914239 Bacteria Bacteria 211 2.71e-50   NTclustered gi|2874253749|emb|OY969623.1| 1914239 g30898 i0 98.333 186.08 120 2 60 0 81 200 7053263 7053144 MAG: uncultured Gemmataceae bacterium isolate MFD06742.bin.c.1 genome assembly, chromosome: 1 blastn 37216 211 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Gemmatales Gemmataceae   uncultured Gemmataceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;