RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA681861", tax_clade = "Opisthokonta" and tax_phylum = "Nematoda"

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tax_superkingdom 1

tax_phylum 1

  • Nematoda · 3 ✖

tax_kingdom 1

tax_clade 1

  • Opisthokonta · 3 ✖

bioproject 1

  • PRJNA681861 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
12650725 12650725 PRJNA681861_P_NODE_46690_length_152_cov_3.479675_g44590_i0 PRJNA681861 46690 152 3.479675 5.289106 Wilsonema 288526 Nematoda Nematoda 265 1.47e-66   NTclustered gi|51094012|gb|AY593927.1| 288527 g44590 i0 98.039 100.638157894737 153 2 100 1 1 152 367 215 Wilsonema otophorum strain WilsOto2 2 708+709 18S ribosomal RNA gene, partial sequence blastn 15297 265 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Plectida Plectidae Wilsonema Wilsonema otophorum
15960306 15960306 PRJNA681861_P_NODE_37393_length_182_cov_2.895425_g35293_i0 PRJNA681861 37393 182 2.895425 5.2696735 Camacolaimus sp. OVN-2021 2893397 Nematoda Nematoda 239 1.11e-58   NTclustered gi|2130729777|gb|OL416397.1| 2893397 g35293 i0 89.691 106.956043956044 194 8 100 5 1 182 2069 1876 Camacolaimus sp. OVN-2021 isolate 2020-8 large subunit ribosomal RNA gene, partial sequence blastn 19466 239 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Plectida Leptolaimidae Camacolaimus Camacolaimus sp. OVN-2021
19023142 19023142 PRJNA681861_P_NODE_28395_length_227_cov_3.015152_g26295_i0 PRJNA681861 28395 227 3.015152 6.84439504 Rhabditidae 6243 Nematoda Nematoda 420 4.81e-113   NTclustered gi|4099003|gb|U81583.1|CSU81583 55804 g26295 i0 100 94.9559471365639 227 0 100 0 1 227 608 834 Cuticularia sp. 18S small subunit ribosomal RNA gene, complete sequence blastn 21555 420 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Cuticularia Cuticularia sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;