RNAquarium Metadata Server
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contig_metadata

5 rows where bioproject = "PRJNA681861" and tax_clade = "Discoba"

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tax_superkingdom 1

tax_phylum 1

tax_clade 1

  • Discoba · 5 ✖

bioproject 1

  • PRJNA681861 · 5 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
10861525 10861525 PRJNA681861_P_NODE_8009_length_716_cov_3.550218_g6334_i0 PRJNA681861 8009 716 3.550218 25.41956088 Tetramitus jugosus 166959 Heterolobosea other_Eukaryota 1267 0   NTclustered gi|973414039|gb|KT257697.1| 166959 g6334 i0 99.149 57.122905027933 705 5 98 1 12 716 739 36 Tetramitus jugosus strain PrGuaT 18S ribosomal RNA gene, partial sequence blastn 40900 1267 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Tetramitus Tetramitus jugosus
12650698 12650698 PRJNA681861_P_NODE_17230_length_365_cov_2.678571_g15134_i0 PRJNA681861 17230 365 2.678571 9.77678415 Tetramitus 5768 Heterolobosea other_Eukaryota 669 0   NTclustered gi|1707456|emb|X93085.1| 166960 g15134 i0 99.726 92.1232876712329 365 1 100 0 1 365 1168 804 Tetramitus thorntoni SSU rRNA gene blastn 33625 669 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Tetramitus Tetramitus thorntoni
18509635 18509635 PRJNA681861_P_NODE_22695_length_281_cov_5.047619_g20595_i0 PRJNA681861 22695 281 5.047619 14.18380939 Vahlkampfia sp. 1874882 Heterolobosea other_Eukaryota 329 1.07e-85   NTclustered gi|2651357786|gb|PP174301.1| 1874882 g20595 i0 87.986 86.9430604982206 283 28 99 5 2 281 3243 2964 Vahlkampfia sp. isolate 24M small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 24431 329 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Vahlkampfia Vahlkampfia sp.
21060111 21060111 PRJNA681861_P_NODE_8577_length_677_cov_3.341049_g6834_i0 PRJNA681861 8577 677 3.341049 22.61890173 Vahlkampfia sp. 1874882 Heterolobosea other_Eukaryota 195 1.0600000000000001e-44   NTclustered gi|2651357786|gb|PP174301.1| 1874882 g6834 i0 93.798 5.54357459379616 129 8 19 0 128 256 3984 3856 Vahlkampfia sp. isolate 24M small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 3753 195 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Vahlkampfia Vahlkampfia sp.
25397837 25397837 PRJNA681861_P_NODE_17180_length_366_cov_2.611276_g15084_i0 PRJNA681861 17180 366 2.611276 9.55727016 Tetramitus 5768 Heterolobosea other_Eukaryota 673 0   NTclustered gi|160767|gb|M98050.1|PJURG16S 166959 g15084 i0 99.727 59.7786885245902 366 1 100 0 1 366 1443 1808 Paratetramitus jugosus 16S ribosomal RNA-like gene blastn 21879 676 0.995562130177515 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Tetramitus Tetramitus jugosus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;