RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA681822" and tax_phylum = "Chlamydiota"

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tax_superkingdom 1

tax_phylum 1

  • Chlamydiota · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA681822 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26955283 26955283 PRJNA681822_P_NODE_399822_length_249_cov_1.750000_g398333_i0 PRJNA681822 399822 249 1.75 4.3575 Simkaniaceae bacterium 2698248 Bacteria Bacteria 94.7 2.07e-20   NR MCK4934293.1 2698248 g398333 i0 50 0.963855421686747 80 40 96.4 0 243 4 143 222 MCK4934293.1 hypothetical protein [Simkaniaceae bacterium] diamond 240 94.7 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Simkaniaceae   Simkaniaceae bacterium
29166440 29166440 PRJNA681822_P_NODE_443909_length_245_cov_0.895349_g442420_i0 PRJNA681822 443909 245 0.895349 2.19360505 Parachlamydia sp. 2052048 Bacteria Bacteria 49.3 1.87e-4   NR PJD97550.1 2052048 g442420 i0 35.8 0.991836734693878 81 51 98 1 241 2 455 535 PJD97550.1 MAG: TIGR02452 family protein [Parachlamydia sp.] diamond 243 49.3 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae Parachlamydia Parachlamydia sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;