RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA681822" and tax_phylum = "Artverviricota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Artverviricota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJNA681822 · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2445752 2445752 PRJNA681822_P_NODE_2802_length_2220_cov_9.449930_g2353_i0 PRJNA681822 2802 2220 9.44993 209.788446 Moloney murine leukemia virus 11801 Viruses Viruses 1357 0   NR NP_057933.2 11801 g2353 i0 99.4 2.72432432432432 672 4 90.8 0 2150 135 658 1329 NP_057933.2 Pr180 [Moloney murine leukemia virus] diamond 6048 1357 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus murleu
5759910 5759910 PRJNA681822_P_NODE_477965_length_241_cov_1.375000_g476475_i0 PRJNA681822 477965 241 1.375 3.31375 Caulimovirus incidianthi 3047726 Viruses Viruses 84.2 7.69e-12   NTclustered gi|161919742|gb|EU155196.1| 10640 g476475 i0 78.626 0.54356846473029 131 24 54 3 106 234 1053 925 Carnation etched ring virus isolate PD-BMT 3.61 RdRp gene, partial cds blastn 131 84.2 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Caulimoviridae Caulimovirus Caulimovirus incidianthi
8308659 8308659 PRJNA681822_P_NODE_414307_length_248_cov_0.880000_g412818_i0 PRJNA681822 414307 248 0.88 2.1824 Enzootic nasal tumor virus 2 2913605 Viruses Viruses 418 1.9199999999999994e-112   NTclustered gi|2705592907|gb|OR669623.1| 2913605 g412818 i0 97.177 128.463709677419 248 5 100 1 1 248 426 181 Enzootic nasal tumor virus 2 isolate enENTV-CQ1 gag protein (gag), pro protein (pro), pol protein (pol), and env protein (env) genes, complete cds blastn 31859 418 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Betaretrovirus Enzootic nasal tumor virus 2
29324026 29324026 PRJNA681822_P_NODE_442969_length_245_cov_0.895349_g441480_i0 PRJNA681822 442969 245 0.895349 2.19360505 Caulimovirus sp. 2692413 Viruses Viruses 63.2 1.75e-9   NR XBU76865.1 2692413 g441480 i0 73.7 0.46530612244898 38 10 46.5 0 131 18 1 38 XBU76865.1 movement protein [Caulimovirus sp.] diamond 114 63.2 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Caulimoviridae Caulimovirus Caulimovirus sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;