RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA681822", tax_kingdom = "Thermotogati" and tax_phylum = "Thermotogota"

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tax_superkingdom 1

tax_phylum 1

  • Thermotogota · 3 ✖

tax_kingdom 1

  • Thermotogati · 3 ✖

bioproject 1

  • PRJNA681822 · 3 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26618935 26618935 PRJNA681822_P_NODE_360181_length_257_cov_2.206522_g358692_i0 PRJNA681822 360181 257 2.206522 5.67076154 Thermotogales 2419 Bacteria Bacteria 166 9.16e-49   NR HOA17997.1 1871331 g358692 i0 100 1.98443579766537 85 0 99.2 0 1 255 63 147 HOA17997.1 hypothetical protein [Fervidobacterium sp.] diamond 510 166 1 Bacteria   Thermotogati Thermotogota Thermotogae Thermotogales Fervidobacteriaceae Fervidobacterium Fervidobacterium sp.
27219948 27219948 PRJNA681822_P_NODE_178102_length_322_cov_0.927711_g176614_i0 PRJNA681822 178102 322 0.927711 2.98722942 Bacteria 2 Bacteria Bacteria 43.9 0.0345   NR MEN6368331.1 2053689 g176614 i0 58.1 0.829192546583851 31 12 28 1 159 248 218 248 MEN6368331.1 phosphonate ABC transporter, permease protein PhnE [Thermotogota bacterium] diamond 267 43.9 1 Bacteria   Thermotogati Thermotogota         Thermotogota bacterium
27650791 27650791 PRJNA681822_P_NODE_242904_length_288_cov_1.432558_g241415_i0 PRJNA681822 242904 288 1.432558 4.12576704 Mesotoga sp. 2053577 Bacteria Bacteria 182 1.2399999999999998e-55   NR HQN29434.1 2053577 g241415 i0 100 1.97916666666667 95 0 99 0 287 3 47 141 HQN29434.1 hypothetical protein [Mesotoga sp.] diamond 570 182 1 Bacteria   Thermotogati Thermotogota Thermotogae Kosmotogales Kosmotogaceae Mesotoga Mesotoga sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;