RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where bioproject = "PRJNA681822" and tax_clade = "Nitrospinota/Tectimicrobiota group"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • Nitrospinota/Tectimicrobiota group · 3 ✖

bioproject 1

  • PRJNA681822 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27030468 27030468 PRJNA681822_P_NODE_305202_length_273_cov_1.155000_g303713_i0 PRJNA681822 305202 273 1.155 3.15315 Pseudomonadati 3379134 Bacteria Bacteria 112 2.25e-27   NR MBF0275045.1 2026769 g303713 i0 55.1 1.96703296703297 89 40 97.8 0 269 3 136 224 MBF0275045.1 LysM peptidoglycan-binding domain-containing protein [Nitrospinota bacterium] diamond 537 112 1 Bacteria Nitrospinota/Tectimicrobiota group Pseudomonadati Nitrospinota         Nitrospinota bacterium
27271651 27271651 PRJNA681822_P_NODE_371263_length_254_cov_1.701657_g369774_i0 PRJNA681822 371263 254 1.701657 4.32220878 Nitrospina gracilis 35801 Bacteria Bacteria 73.2 8.01e-13   NR WP_237098453.1 35801 g369774 i0 43.2 8.84645669291339 81 42 95.7 1 244 2 48 124 WP_237098453.1 carboxypeptidase M32 [Nitrospina gracilis] diamond 2247 73.2 1 Bacteria Nitrospinota/Tectimicrobiota group Pseudomonadati Nitrospinota Nitrospinia Nitrospinales Nitrospinaceae Nitrospina Nitrospina gracilis
29292504 29292504 PRJNA681822_P_NODE_55389_length_501_cov_2.172897_g53921_i0 PRJNA681822 55389 501 2.172897 10.88621397 Nitrospinota bacterium 2026769 Bacteria Bacteria 162 1.59e-45   NR MBF0275045.1 2026769 g53921 i0 52 0.898203592814371 150 66 86.2 1 54 485 122 271 MBF0275045.1 LysM peptidoglycan-binding domain-containing protein [Nitrospinota bacterium] diamond 450 162 1 Bacteria Nitrospinota/Tectimicrobiota group Pseudomonadati Nitrospinota         Nitrospinota bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;