RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA681822", tax_clade = "Methanomada group" and tax_phylum = "Methanobacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Methanobacteriota · 2 ✖

tax_kingdom 1

tax_clade 1

  • Methanomada group · 2 ✖

bioproject 1

  • PRJNA681822 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27461384 27461384 PRJNA681822_P_NODE_463863_length_243_cov_0.905882_g462373_i0 PRJNA681822 463863 243 0.905882 2.20129326 Methanobrevibacter sp. 66852 Archaea Archaea 46.2 0.00219   NR WP_303347139.1 66852 g462373 i0 36.5 0.91358024691358 74 44 91.4 2 233 12 70 140 WP_303347139.1 helicase C-terminal domain-containing protein [Methanobrevibacter sp.] diamond 222 46.2 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter sp.
32705564 32705564 PRJNA681822_P_NODE_479180_length_241_cov_0.916667_g477690_i0 PRJNA681822 479180 241 0.916667 2.20916747 Methanobrevibacter sp. 66852 Archaea Archaea 160 2.36e-46   NR WP_292825651.1 66852 g477690 i0 100 0.983402489626556 79 0 98.3 0 239 3 166 244 WP_292825651.1 mevalonate kinase [Methanobrevibacter sp.] diamond 237 160 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;