RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA681822", tax_clade = "Metamonada" and tax_phylum = "Fornicata"

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tax_superkingdom 1

tax_phylum 1

  • Fornicata · 3 ✖

tax_clade 1

  • Metamonada · 3 ✖

bioproject 1

  • PRJNA681822 · 3 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
29924160 29924160 PRJNA681822_P_NODE_320711_length_269_cov_0.811224_g319222_i0 PRJNA681822 320711 269 0.811224 2.18219256 Giardia intestinalis 5741 Fornicata other_Eukaryota 43.5 0.0282   NR XP_001708757.1 5741 g319222 i0 37.3 0.747211895910781 67 32 64.7 3 32 205 783 848 XP_001708757.1 High cysteine membrane protein EGF-like [Giardia intestinalis] diamond 201 43.5 1 Eukaryota Metamonada   Fornicata   Diplomonadida Hexamitidae Giardia Giardia duodenalis
31863627 31863627 PRJNA681822_P_NODE_448057_length_244_cov_1.801170_g446567_i0 PRJNA681822 448057 244 1.80117 4.3948548 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 52.4 1.53e-5   NR XP_067766953.1 348837 g446567 i0 57.1 1.58606557377049 42 17 50.4 1 14 136 244 285 XP_067766953.1 Cysteine-rich membrane protein 2 [Spironucleus salmonicida] diamond 387 52.8 0.992424242424242 Eukaryota Metamonada   Fornicata   Diplomonadida Hexamitidae Spironucleus Spironucleus salmonicida
32579937 32579937 PRJNA681822_P_NODE_453739_length_244_cov_0.900585_g452249_i0 PRJNA681822 453739 244 0.900585 2.1974274 Aduncisulcus paluster 2918883 Fornicata other_Eukaryota 99 6.37e-22   NR GKT23874.1 2918883 g452249 i0 57.3 0.922131147540984 75 31 92.2 1 1 225 952 1025 GKT23874.1 Branched-chain-amino-acid aminotransferase [Aduncisulcus paluster] diamond 225 99 1 Eukaryota Metamonada   Fornicata       Aduncisulcus Aduncisulcus paluster

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;