RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA681822" and tax_clade = "CRuMs"

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tax_superkingdom 1

tax_clade 1

  • CRuMs · 2 ✖

bioproject 1

  • PRJNA681822 · 2 ✖

analysis 1

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
653789 653789 PRJNA681822_P_NODE_283941_length_278_cov_1.502439_g282452_i0 PRJNA681822 283941 278 1.502439 4.17678042 Mantamonas sp. Dar es Salaam 1238683 Root_unresolved Root_unresolved 337 6.309999999999998e-88   NTclustered gi|300078495|gb|GU001157.1| 1238683 g282452 i0 93.421 81.1654676258993 228 13 82 2 52 278 2463 2689 Mantomonas sp. Dar es Salaam 28S ribosomal RNA gene, partial sequence blastn 22564 337 1 Eukaryota CRuMs         Mantamonadidae Mantamonas Mantamonas sp. Dar es Salaam
8305339 8305339 PRJNA681822_P_NODE_146767_length_344_cov_1.420664_g145279_i0 PRJNA681822 146767 344 1.420664 4.88708416 Diphylleia rotans 190327 Root_unresolved Root_unresolved 636 7.059999999999998e-178   NTclustered gi|1200177731|gb|MF039365.1| 190327 g145279 i0 100 47.7936046511628 344 0 100 0 1 344 2710 3053 Diphylleia rotans isolate D_NIES3764 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 16441 636 1 Eukaryota CRuMs         Collodictyonidae Diphylleia Diphylleia rotans

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;