RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA680334" and tax_phylum = "Mycoplasmatota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Mycoplasmatota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJNA680334 · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1926605 1926605 PRJNA680334_S_NODE_86522_length_161_cov_1.929688_g86036_i0 PRJNA680334 86522 161 1.929688 3.10679768 Metamycoplasma faucium 56142 Bacteria Bacteria 259 7.34e-65   NTclustered gi|2708452869|gb|CP088155.1| 56142 g86036 i0 96.203 1.96273291925466 158 6 98 0 1 158 91695 91538 Metamycoplasma faucium strain UMCG-MFM1 chromosome, complete genome blastn 316 259 1 Bacteria   Bacillati Mycoplasmatota   Mycoplasmoidales Metamycoplasmataceae Metamycoplasma Metamycoplasma faucium
3721128 3721128 PRJNA680334_S_NODE_78603_length_166_cov_2.187970_g78117_i0 PRJNA680334 78603 166 2.18797 3.6320302 Mesomycoplasma 2923352 Bacteria Bacteria 305 9.67e-79   NTclustered gi|2713084492|gb|CP150431.1| 2100 g78117 i0 100 15.0361445783133 165 0 99 0 2 166 351799 351635 Mesomycoplasma hyorhinis strain Nahrain chromosome blastn 2496 305 1 Bacteria   Bacillati Mycoplasmatota   Mycoplasmoidales Metamycoplasmataceae Mesomycoplasma Mesomycoplasma hyorhinis
30239977 30239977 PRJNA680334_S_NODE_64692_length_177_cov_1.361111_g64206_i0 PRJNA680334 64692 177 1.361111 2.40916647 Mollicutes bacterium LVI A 37628 Bacteria Bacteria 67.8 2e-12   NR WOO88734.1 3081164 g64206 i0 56.1 3.83050847457627 57 25 96.6 0 176 6 58 114 WOO88734.1 single-stranded DNA-binding protein [Mollicutes bacterium LVI A0075] diamond 678 67.8 1 Bacteria   Bacillati Mycoplasmatota Mollicutes       Mollicutes bacterium LVI A0075
31314293 31314293 PRJNA680334_S_NODE_9075_length_323_cov_11.644828_g8589_i0 PRJNA680334 9075 323 11.644828 37.61279444 Candidatus Phytoplasma australasiaticum 2754999 Bacteria Bacteria 135 3.3e-39   NR MDV3191316.1 2754999 g8589 i0 79.5 0.770897832817337 83 14 74.3 1 242 3 1 83 MDV3191316.1 hypothetical protein [Candidatus Phytoplasma australasiaticum] diamond 249 135 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Acholeplasmatales Acholeplasmataceae Candidatus Phytoplasma Candidatus Phytoplasma australasiaticum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;