RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA680334" and tax_phylum = "Echinodermata"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Echinodermata · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA680334 · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6273174 6273174 PRJNA680334_S_NODE_29645_length_225_cov_11.119792_g29159_i0 PRJNA680334 29645 225 11.119792 25.019532 Echinoidea 7625 Echinodermata other_Eukaryota 65.8 2.57e-6   NTclustered gi|2707369052|ref|XM_054899513.2| 7653 g29159 i0 93.182 1.10666666666667 44 3 20 0 1 44 506 549 PREDICTED: Lytechinus pictus small ribosomal subunit protein uS13 (LOC129261451), mRNA blastn 249 65.8 1 Eukaryota Opisthokonta Metazoa Echinodermata Echinoidea Temnopleuroida Toxopneustidae Lytechinus Lytechinus pictus
29714343 29714343 PRJNA680334_S_NODE_42470_length_202_cov_2.118343_g41984_i0 PRJNA680334 42470 202 2.118343 4.27905286 Opisthokonta 33154 Echinodermata other_Eukaryota 55.5 6.93e-7   NR PIK53990.1 307972 g41984 i0 82.1 1.24752475247525 28 5 41.6 0 2 85 345 372 PIK53990.1 methionine adenosyltransferase [Apostichopus japonicus] diamond 252 55.8 0.99462365591397806 Eukaryota Opisthokonta Metazoa Echinodermata Holothuroidea Aspidochirotida Stichopodidae Apostichopus Apostichopus japonicus
32338614 32338614 PRJNA680334_S_NODE_64939_length_176_cov_6.335664_g64453_i0 PRJNA680334 64939 176 6.335664 11.15076864 Metazoa 33208 Echinodermata other_Eukaryota 48.1 1.89e-4   NR XP_071506785.1 105358 g64453 i0 49.1 1.94318181818182 57 28 97.2 1 2 172 547 602 XP_071506785.1 LOW QUALITY PROTEIN: heat shock cognate 71 kDa protein-like [Diadema antillarum] diamond 342 48.1 1 Eukaryota Opisthokonta Metazoa Echinodermata Echinoidea Diadematoida Diadematidae Diadema Diadema antillarum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;