RNAquarium Metadata Server
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contig_metadata

11 rows where bioproject = "PRJNA680334" and tax_phylum = "Ciliophora"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Ciliophora · 11 ✖

tax_clade 1

bioproject 1

  • PRJNA680334 · 11 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4997660 4997660 PRJNA680334_S_NODE_46224_length_196_cov_9.386503_g45738_i0 PRJNA680334 46224 196 9.386503 18.39754588 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 311 2.53e-80   NTclustered gi|1837628855|gb|MN158348.1| 5909 g45738 i0 95.385 92.9030612244898 195 9 99 0 1 195 2946 2752 Tetrahymena rostrata strain TRAUS 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S ribosomal RNA gene, complete sequence blastn 18209 311 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena rostrata
5754316 5754316 PRJNA680334_S_NODE_99305_length_154_cov_1.727273_g98819_i0 PRJNA680334 99305 154 1.727273 2.66000042 Tetrahymena 5890 SAR_Eukaryotes SAR_Eukaryotes 83.2 6.2e-17   NR XP_001007782.2 312017 g98819 i0 92.3 1.51948051948052 39 3 76 0 8 124 103 141 XP_001007782.2 Serine/Threonine kinase domain protein [Tetrahymena thermophila SB210] diamond 234 83.6 0.995215311004785 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena thermophila
20295634 20295634 PRJNA680334_S_NODE_4296_length_404_cov_12.099730_g3814_i0 PRJNA680334 4296 404 12.09973 48.8829092 root 1 Root_unresolved Root_unresolved 715 0   NTclustered gi|345541658|gb|JN547815.1| 5911 g3814 i0 98.756 73.230198019802 402 5 99 0 3 404 3807 3406 Tetrahymena thermophila strain ATCC 30382 18S ribosomal RNA gene, partial sequence; and internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 26S ribosomal RNA gene, complete sequence blastn 29585 715 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena thermophila
22327655 22327655 PRJNA680334_S_NODE_7198_length_346_cov_11.399361_g6712_i0 PRJNA680334 7198 346 11.399361 39.44178906 Epistylis sp. FG-2015 1607876 SAR_Eukaryotes SAR_Eukaryotes 577 4.3699999999999996e-160   NTclustered gi|759083557|gb|KM222174.1| 1607876 g6712 i0 97.898 93.742774566474 333 7 96 0 13 345 1 333 Epistylis sp. FG-2015 voucher SZ2011052302 large subunit ribosomal RNA gene, partial sequence blastn 32435 577 1 Eukaryota Sar   Ciliophora Oligohymenophorea Sessilida Epistylidae Epistylis Epistylis sp. FG-2015
25395660 25395660 PRJNA680334_S_NODE_25440_length_236_cov_6.862069_g24954_i0 PRJNA680334 25440 236 6.862069 16.19448284 root 1 Root_unresolved Root_unresolved 272 1.4899999999999996e-68   NTclustered gi|10832|emb|X54512.1| 5911 g24954 i0 89.671 79.7584745762712 213 22 90 0 24 236 8330 8118 T. thermophila rdn A+ gene for pre-RNA, 17S rRNA, 5.8S rRNA, 26S rRNA blastn 18823 272 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena thermophila
27682532 27682532 PRJNA680334_S_NODE_46044_length_197_cov_1.926829_g45558_i0 PRJNA680334 46044 197 1.926829 3.79585313 Paramecium pentaurelia 43138 SAR_Eukaryotes SAR_Eukaryotes 42.4 0.0198   NR CAD8171430.1 43138 g45558 i0 45.7 1.4010152284264 46 24 70.1 1 194 57 135 179 CAD8171430.1 unnamed protein product [Paramecium pentaurelia] diamond 276 42.4 1 Eukaryota Sar   Ciliophora Oligohymenophorea Peniculida Parameciidae Paramecium Paramecium pentaurelia
27871587 27871587 PRJNA680334_S_NODE_75765_length_168_cov_2.185185_g75279_i0 PRJNA680334 75765 168 2.185185 3.6711108 Tetrahymena thermophila SB21 5911 SAR_Eukaryotes SAR_Eukaryotes 79.3 1.68e-15   NR XP_001031668.1 312017 g75279 i0 55.6 0.964285714285714 54 24 96.4 0 1 162 381 434 XP_001031668.1 platelet-activating factor acetylhydrolase Ib subunit alpha, putative [Tetrahymena thermophila SB210] diamond 162 79.3 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena thermophila
28029603 28029603 PRJNA680334_S_NODE_41145_length_204_cov_1.970760_g40659_i0 PRJNA680334 41145 204 1.97076 4.0203504 Blepharisma stoltei 1481888 SAR_Eukaryotes SAR_Eukaryotes 51.2 7.18e-6   NR CAG9334277.1 1481888 g40659 i0 40.9 0.970588235294118 66 38 95.6 1 7 201 56 121 CAG9334277.1 unnamed protein product [Blepharisma stoltei] diamond 198 51.2 1 Eukaryota Sar   Ciliophora Heterotrichea Heterotrichida Blepharismidae Blepharisma Blepharisma stoltei
28609637 28609637 PRJNA680334_S_NODE_107807_length_150_cov_1.692308_g107321_i0 PRJNA680334 107807 150 1.692308 2.538462 Tetrahymena 5890 SAR_Eukaryotes SAR_Eukaryotes 80.5 5.03e-16   NR XP_001007782.2 312017 g107321 i0 100 1.36 34 0 68 0 15 116 221 254 XP_001007782.2 Serine/Threonine kinase domain protein [Tetrahymena thermophila SB210] diamond 204 80.5 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena thermophila
29418615 29418615 PRJNA680334_S_NODE_57109_length_184_cov_2.205298_g56623_i0 PRJNA680334 57109 184 2.205298 4.05774832 Stylonychia lemnae 5949 SAR_Eukaryotes SAR_Eukaryotes 57 1.52e-7   NR CDW78518.1 5949 g56623 i0 72.7 0.53804347826087 33 9 53.8 0 170 72 511 543 CDW78518.1 cathepsin c [Stylonychia lemnae] diamond 99 57 1 Eukaryota Sar   Ciliophora Spirotrichea Sporadotrichida Oxytrichidae Stylonychia Stylonychia lemnae
29860800 29860800 PRJNA680334_S_NODE_63931_length_177_cov_4.986111_g63445_i0 PRJNA680334 63931 177 4.986111 8.82541647 Tetrahymena thermophila SB21 5911 SAR_Eukaryotes SAR_Eukaryotes 66.6 5.65e-11   NR XP_001007782.2 312017 g63445 i0 85.7 1.1864406779661 35 5 59.3 0 113 9 185 219 XP_001007782.2 Serine/Threonine kinase domain protein [Tetrahymena thermophila SB210] diamond 210 66.6 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena thermophila

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;