RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA680334", tax_kingdom = "Pseudomonadati" and tax_phylum = "Spirochaetota"

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tax_superkingdom 1

tax_phylum 1

  • Spirochaetota · 4 ✖

tax_kingdom 1

  • Pseudomonadati · 4 ✖

bioproject 1

  • PRJNA680334 · 4 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
12129994 12129994 PRJNA680334_S_NODE_9310_length_321_cov_4.256944_g8824_i0 PRJNA680334 9310 321 4.256944 13.66479024 Treponema vincentii 69710 Bacteria Bacteria 207 1.41e-62   NR WP_006187840.1 69710 g8824 i0 96.2 0.990654205607477 106 4 99.1 0 2 319 163 268 WP_006187840.1 NAD(P)-dependent malic enzyme [Treponema vincentii] diamond 318 207 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Treponemataceae Treponema Treponema vincentii
27315154 27315154 PRJNA680334_S_NODE_70463_length_172_cov_2.359712_g69977_i0 PRJNA680334 70463 172 2.359712 4.05870464 Pseudomonadati 3379134 Bacteria Bacteria 68.6 7.3e-12   NR WP_135614050.1 2484950 g69977 i0 63.6 8.51162790697674 44 16 76.7 0 133 2 1 44 WP_135614050.1 NmrA family NAD(P)-binding protein [Leptospira koniambonensis] diamond 1464 68.6 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Leptospirales Leptospiraceae Leptospira Leptospira koniambonensis
27429849 27429849 PRJNA680334_S_NODE_69123_length_173_cov_2.600000_g68637_i0 PRJNA680334 69123 173 2.6 4.498 Treponema sp. 166 Bacteria Bacteria 117 8.540000000000001e-33   NR MFC2603953.1 166 g68637 i0 98.2 1.97687861271676 57 1 98.8 0 171 1 32 88 MFC2603953.1 hypothetical protein [Treponema sp.] diamond 342 117 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Treponemataceae Treponema Treponema sp.
32642366 32642366 PRJNA680334_S_NODE_88700_length_159_cov_16.523810_g88214_i0 PRJNA680334 88700 159 16.52381 26.2728579 Treponemataceae bacterium 2854022 Bacteria Bacteria 42.7 0.0116   NR HNY20573.1 2854022 g88214 i0 43.5 0.867924528301887 46 25 84.9 1 11 145 56 101 HNY20573.1 GTPase RsgA [Treponemataceae bacterium] diamond 138 42.7 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Treponemataceae   Treponemataceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;