RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

10 rows where bioproject = "PRJNA680334", tax_kingdom = "Pseudomonadati" and tax_phylum = "Myxococcota"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

  • Myxococcota · 10 ✖

tax_kingdom 1

  • Pseudomonadati · 10 ✖

bioproject 1

  • PRJNA680334 · 10 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
12129263 12129263 PRJNA680334_S_NODE_49150_length_193_cov_2.043750_g48664_i0 PRJNA680334 49150 193 2.04375 3.9444375 Myxococcus stipitatus 83455 Bacteria Bacteria 119 1.62e-22   NTclustered gi|2722781719|gb|CP102770.1| 83455 g48664 i0 82.143 0.725388601036269 140 23 72 2 55 193 5023671 5023533 Myxococcus stipitatus strain YRE12 chromosome, complete genome blastn 140 119 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Myxococcaceae Myxococcus Myxococcus stipitatus
15953333 15953333 PRJNA680334_S_NODE_90753_length_158_cov_5.248000_g90267_i0 PRJNA680334 90753 158 5.248 8.29184 Myxococcales bacterium UTMC 4097 1826750 Bacteria Bacteria 261 1.99e-65   NTclustered gi|1015860418|gb|KU923380.1| 1826750 g90267 i0 96.795 99.7721518987342 156 5 99 0 3 158 1148 1303 Myxobacteria bacterium UTMC 4097 16S ribosomal RNA gene, partial sequence blastn 15764 261 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales     Myxococcales bacterium UTMC 4097
22326868 22326868 PRJNA680334_S_NODE_27498_length_230_cov_32.035533_g27012_i0 PRJNA680334 27498 230 32.035533 73.6817259 uncultured Haliangium sp. 373538 Bacteria Bacteria 220 5.32e-53   NTclustered gi|310755276|gb|HQ213166.1| 373538 g27012 i0 93.333 6.2695652173913 150 8 65 2 61 209 930 1078 Uncultured Haliangium sp. clone 3_E01 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence blastn 1442 220 1 Bacteria   Pseudomonadati Myxococcota   Haliangiales Kofleriaceae Haliangium uncultured Haliangium sp.
24121254 24121254 PRJNA680334_S_NODE_56099_length_185_cov_2.394737_g55613_i0 PRJNA680334 56099 185 2.394737 4.43026345 root 1 Root_unresolved Root_unresolved 259 8.67e-65   NTclustered gi|169977285|emb|AM946600.1| 52 g55613 i0 93.22 85.5945945945946 177 10 95 2 11 185 1622 1798 Chondromyces crocatus ajudazol biosynthesis gene cluster, strain Cmc5 blastn 15835 261 0.992337164750958 Bacteria   Pseudomonadati Myxococcota   Polyangiales Polyangiaceae Chondromyces Chondromyces crocatus
24121331 24121331 PRJNA680334_S_NODE_82859_length_163_cov_2.900000_g82373_i0 PRJNA680334 82859 163 2.9 4.727 Sorangium 39643 Bacteria Bacteria 263 5.77e-66   NTclustered gi|1338588479|gb|CP012673.1| 56 g82373 i0 95.706 105.969325153374 163 7 100 0 1 163 3449509 3449671 Sorangium cellulosum strain So ce26 chromosome, complete genome blastn 17273 263 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Polyangiaceae Sorangium Sorangium cellulosum
27366703 27366703 PRJNA680334_S_NODE_19623_length_256_cov_2.260090_g19137_i0 PRJNA680334 19623 256 2.26009 5.7858304 Corallococcus exercitus 2316736 Bacteria Bacteria 48.5 1.18e-4   NR WP_171411814.1 2316736 g19137 i0 43.6 0.64453125 55 29 62.1 1 160 2 10 64 WP_171411814.1 four-helix bundle copper-binding protein [Corallococcus exercitus] diamond 165 48.5 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Myxococcaceae Corallococcus Corallococcus exercitus
28408428 28408428 PRJNA680334_S_NODE_26566_length_233_cov_4.375000_g26080_i0 PRJNA680334 26566 233 4.375 10.19375 Archangium sp. 1872627 Bacteria Bacteria 43.1 0.0228   NR HYO69591.1 1872627 g26080 i0 48.8 2.0343347639485 41 21 52.8 0 106 228 217 257 HYO69591.1 tetratricopeptide repeat protein [Archangium sp.] diamond 474 43.1 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Archangiaceae Archangium Archangium sp.
28534890 28534890 PRJNA680334_S_NODE_26867_length_232_cov_5.798995_g26381_i0 PRJNA680334 26867 232 5.798995 13.4536684 Myxococcales bacterium 2026763 Bacteria Bacteria 44.3 0.00941   NR MFN7130904.1 2026763 g26381 i0 44.9 0.633620689655172 49 27 63.4 0 25 171 357 405 MFN7130904.1 DPP IV N-terminal domain-containing protein [Myxococcales bacterium] diamond 147 44.3 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales     Myxococcales bacterium
28661074 28661074 PRJNA680334_S_NODE_53187_length_188_cov_3.251613_g52701_i0 PRJNA680334 53187 188 3.251613 6.11303244 Myxococcales bacterium 2026763 Bacteria Bacteria 101 7.58e-25   NR MBL9100014.1 2026763 g52701 i0 78.7 0.973404255319149 61 13 97.3 0 187 5 96 156 MBL9100014.1 glutathione S-transferase N-terminal domain-containing protein [Myxococcales bacterium] diamond 183 101 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales     Myxococcales bacterium
30461517 30461517 PRJNA680334_S_NODE_16653_length_269_cov_3.601695_g16167_i0 PRJNA680334 16653 269 3.601695 9.68855955 Myxococcales bacterium 2026763 Bacteria Bacteria 44.3 0.015   NR RYE95084.1 2026763 g16167 i0 48.9 0.50185873605948 45 23 50.2 0 197 63 977 1021 RYE95084.1 MAG: hypothetical protein EOO75_00210 [Myxococcales bacterium] diamond 135 44.3 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales     Myxococcales bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;