RNAquarium Metadata Server
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contig_metadata

8 rows where bioproject = "PRJNA680334", tax_kingdom = "Orthornavirae" and tax_phylum = "Kitrinoviricota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Kitrinoviricota · 8 ✖

tax_kingdom 1

  • Orthornavirae · 8 ✖

bioproject 1

  • PRJNA680334 · 8 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
10853907 10853907 PRJNA680334_S_NODE_4589_length_396_cov_17.801653_g4106_i0 PRJNA680334 4589 396 17.801653 70.49454588 Potexvirus trifolii 3433859 Viruses Viruses 643 4.919999999999999e-180   NTclustered gi|2792601926|gb|PQ162444.1| 12188 g4106 i0 95.96 31.4974747474747 396 16 100 0 1 396 5448 5843 White clover mosaic virus isolate DSMZ PV-1407, complete genome blastn 12473 643 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Tymovirales Alphaflexiviridae Potexvirus Potexvirus trifolii
13404545 13404545 PRJNA680334_S_NODE_8751_length_326_cov_16.058020_g8265_i0 PRJNA680334 8751 326 16.05802 52.3491452 Potexvirus trifolii 3433859 Viruses Viruses 448 3.3499999999999996e-121   NTclustered gi|61323|emb|X16636.1| 12188 g8265 i0 91.875 25.319018404908 320 26 98 0 7 326 5527 5846 White clover mosaic virus total genomic mRNA blastn 8254 448 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Tymovirales Alphaflexiviridae Potexvirus Potexvirus trifolii
14678355 14678355 PRJNA680334_S_NODE_1712_length_542_cov_9.377210_g1257_i0 PRJNA680334 1712 542 9.37721 50.8244782 Tobamovirus plantagonis 3432885 Viruses Viruses 850 0   NTclustered gi|1820428442|gb|MT129775.1| 51680 g1257 i0 95.009 36.7859778597786 541 27 99 0 1 541 5495 4955 Ribgrass mosaic virus strain GudgCC_DN40115-8, complete genome blastn 19938 850 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Martellivirales Virgaviridae Tobamovirus Tobamovirus plantagonis
24876007 24876007 PRJNA680334_S_NODE_4900_length_388_cov_6.878873_g4416_i0 PRJNA680334 4900 388 6.878873 26.69002724 Bromovirus BMV 3427622 Viruses Viruses 712 0   NTclustered gi|2214792991|gb|MW581063.1| 12302 g4416 i0 99.742 36.788659793814404 388 1 100 0 1 388 815 1202 Brome mosaic virus isolate BMV-R movement protein and coat protein genes, complete cds blastn 14274 712 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Martellivirales Bromoviridae Bromovirus Bromovirus BMV
26904042 26904042 PRJNA680334_S_NODE_15141_length_277_cov_4.028689_g14655_i0 PRJNA680334 15141 277 4.028689 11.15946853 Viruses 10239 Viruses Viruses 80.1 4.14e-15   NR QNN89174.1 2768767 g14655 i0 42.5 2.69675090252708 87 50 94.2 0 263 3 1604 1690 QNN89174.1 polyprotein [Ceratobasidium endornavirus 2] diamond 747 80.1 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Martellivirales Endornaviridae   Ceratobasidium endornavirus 2
28629606 28629606 PRJNA680334_S_NODE_30327_length_224_cov_2.853403_g29841_i0 PRJNA680334 30327 224 2.853403 6.39162272 Terfezia claveryi endornavirus 3 3125848 Viruses Viruses 48.5 2.75e-4   NR WWL46806.1 3125848 g29841 i0 35.6 0.977678571428571 73 44 97.8 1 4 222 3403 3472 WWL46806.1 polyprotein [Terfezia claveryi endornavirus 3] diamond 219 48.5 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Martellivirales Endornaviridae   Terfezia claveryi endornavirus 3
30303573 30303573 PRJNA680334_S_NODE_10252_length_312_cov_3.387097_g9766_i0 PRJNA680334 10252 312 3.387097 10.56774264 Grapevine-associated tymo-like virus 2 2814378 Viruses Viruses 98.2 7.96e-22   NR QXN75448.1 2814378 g9766 i0 72.1 0.586538461538462 61 17 58.7 0 311 129 295 355 QXN75448.1 MAG: RNA-dependent RNA polymerase, partial [Grapevine-associated tymo-like virus 2] diamond 183 98.2 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Tymovirales     Grapevine-associated tymo-like virus 2
30745452 30745452 PRJNA680334_S_NODE_2254_length_493_cov_26.084783_g1783_i0 PRJNA680334 2254 493 26.084783 128.59798019 Erysiphe necator associated flexivirus 3 2743100 Viruses Viruses 236 1.96e-68   NR QKN22675.1 2743100 g1783 i0 95.1 0.742393509127789 122 6 74.2 0 1 366 1871 1992 QKN22675.1 RNA-dependent RNA polymerase [Erysiphe necator associated flexivirus 3] diamond 366 236 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Tymovirales     Erysiphe necator associated flexivirus 3

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;