RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA680334", tax_kingdom = "Metazoa" and tax_phylum = "Platyhelminthes"

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tax_superkingdom 1

tax_phylum 1

  • Platyhelminthes · 2 ✖

tax_kingdom 1

  • Metazoa · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA680334 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
13923091 13923091 PRJNA680334_P_NODE_531_length_165_cov_11.411765_g530_i0 PRJNA680334 531 165 11.411765 18.82941225 Metazoa 33208 Platyhelminthes Platyhelminthes 303 3.45e-78   NTclustered gi|60687563|gb|AY914894.1| 6182 g530 i0 100 99.3939393939394 164 0 99 0 2 165 564 401 Schistosoma japonicum unknown mRNA blastn 16400 303 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Strigeidida Schistosomatidae Schistosoma Schistosoma japonicum
25395596 25395596 PRJNA680334_S_NODE_106220_length_150_cov_7.307692_g105734_i0 PRJNA680334 106220 150 7.307692 10.961538 Schistosoma 6181 Platyhelminthes Platyhelminthes 54.7 0.003   NTclustered gi|1084305774|ref|XM_018790254.1| 6183 g105734 i0 100 0.386666666666667 29 0 19 0 119 147 256 228 Schistosoma mansoni putative dna double-strand break repair rad50 ATPase partial mRNA blastn 58 54.7 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Strigeidida Schistosomatidae Schistosoma Schistosoma mansoni

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;