RNAquarium Metadata Server
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contig_metadata

1 row where bioproject = "PRJNA680334", tax_kingdom = "Metazoa" and tax_phylum = "Placozoa"

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tax_superkingdom 1

tax_phylum 1

  • Placozoa · 1 ✖

tax_kingdom 1

  • Metazoa · 1 ✖

tax_clade 1

bioproject 1

  • PRJNA680334 · 1 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4477519 4477519 PRJNA680334_S_NODE_31204_length_222_cov_3.238095_g30718_i0 PRJNA680334 31204 222 3.238095 7.1885709 Placozoa sp. H4 1034858 Placozoa other_Eukaryota 126 1.1399999999999999e-24   NTclustered gi|469664432|gb|KC465311.1| 1034858 g30718 i0 81.699 1.33333333333333 153 26 68 2 55 206 425 274 Placozoa sp. H4 60S ribosomal protein L23 (Rpl23a) mRNA, complete cds blastn 296 126 1 Eukaryota Opisthokonta Metazoa Placozoa         Placozoa sp. H4

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;