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contig_metadata

19 rows where bioproject = "PRJNA680334", tax_clade = "Sar" and tax_phylum = "Oomycota"

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tax_superkingdom 1

tax_phylum 1

  • Oomycota · 19 ✖

tax_clade 1

  • Sar · 19 ✖

bioproject 1

  • PRJNA680334 · 19 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
650013 650013 PRJNA680334_S_NODE_61441_length_180_cov_1.278912_g60955_i0 PRJNA680334 61441 180 1.278912 2.3020416 Aphanomyces euteiches 100861 SAR_Eukaryotes SAR_Eukaryotes 327 2.2699999999999996e-85   NTclustered gi|166044664|emb|CU367573.1| 100861 g60955 i0 99.444 99.3555555555556 180 1 100 0 1 180 496 675 Aphanomyces euteiches cDNA blastn 17884 327 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces euteiches
2444541 2444541 PRJNA680334_S_NODE_11562_length_300_cov_5.112360_g11076_i0 PRJNA680334 11562 300 5.11236 15.33708 Peronosporaceae 4777 SAR_Eukaryotes SAR_Eukaryotes 472 1.81e-128   NTclustered gi|1542033659|ref|NC_040179.1| 4779 g11076 i0 95.578 97.21 294 13 98 0 7 300 674 967 Bremia lactucae mitochondrion, complete genome blastn 29163 472 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Bremia Bremia lactucae
2444746 2444746 PRJNA680334_S_NODE_74242_length_169_cov_2.448529_g73756_i0 PRJNA680334 74242 169 2.448529 4.13801401 root 1 Root_unresolved Root_unresolved 313 5.859999999999999e-81   NTclustered gi|166046611|emb|CU367728.1| 100861 g73756 i0 100 97.508875739645 169 0 100 0 1 169 420 252 Aphanomyces euteiches cDNA blastn 16479 313 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces euteiches
3721093 3721093 PRJNA680334_S_NODE_66223_length_175_cov_4.992958_g65737_i0 PRJNA680334 66223 175 4.992958 8.7376765 Pythium 4797 SAR_Eukaryotes SAR_Eukaryotes 261 2.25e-65   NTclustered gi|338798143|gb|HQ665204.1| 82935 g65737 i0 93.75 100.485714285714 176 8 100 2 1 175 112 285 Pythium deliense isolate CBS 314.33 28S large subunit ribosomal RNA gene, partial sequence blastn 17585 261 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Pythium Pythium deliense
7028072 7028072 PRJNA680334_S_NODE_23406_length_242_cov_6.373206_g22920_i0 PRJNA680334 23406 242 6.373206 15.42315852 Phytophthora sojae 67593 SAR_Eukaryotes SAR_Eukaryotes 78.7 3.6e-10   NTclustered gi|695374258|ref|XM_009516957.1| 67593 g22920 i0 91.228 0.462809917355372 57 5 24 0 80 136 525 581 Phytophthora sojae hypothetical protein mRNA blastn 112 78.7 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora sojae
7547079 7547079 PRJNA680334_S_NODE_106126_length_150_cov_9.547009_g105640_i0 PRJNA680334 106126 150 9.547009 14.3205135 root 1 Root_unresolved Root_unresolved 272 8.609999999999998e-69   NTclustered gi|166046651|emb|CU367768.1| 100861 g105640 i0 99.333 4 150 1 100 0 1 150 359 508 Aphanomyces euteiches cDNA blastn 600 272 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces euteiches
7547258 7547258 PRJNA680334_S_NODE_64146_length_177_cov_3.354167_g63660_i0 PRJNA680334 64146 177 3.354167 5.93687559 root 1 Root_unresolved Root_unresolved 320 3.71e-83   NTclustered gi|166044655|emb|CU367564.1| 100861 g63660 i0 99.432 18.3446327683616 176 1 99 0 1 176 215 390 Aphanomyces euteiches cDNA blastn 3247 320 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces euteiches
8302862 8302862 PRJNA680334_S_NODE_30507_length_223_cov_8.289474_g30021_i0 PRJNA680334 30507 223 8.289474 18.48552702 Saprolegnia diclina 112098 SAR_Eukaryotes SAR_Eukaryotes 156 1.47e-33   NTclustered gi|669146513|ref|XM_008610597.1| 1156394 g30021 i0 79.452 9.29596412556054 219 45 98 0 5 223 434 216 Saprolegnia diclina VS20 40S ribosomal protein S20 mRNA blastn 2073 156 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Saprolegniaceae Saprolegnia Saprolegnia diclina
17747097 17747097 PRJNA680334_S_NODE_36454_length_211_cov_14.269663_g35968_i0 PRJNA680334 36454 211 14.269663 30.10898893 Hyaloperonospora 184462 SAR_Eukaryotes SAR_Eukaryotes 385 1.61e-102   NTclustered gi|158519308|gb|EU054868.1| 123356 g35968 i0 99.526 99.914691943128 211 1 100 0 1 211 74 284 Hyaloperonospora parasitica strain J4011/01 (TUB 12421) large subunit ribosomal RNA gene, partial sequence blastn 21082 385 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Hyaloperonospora Hyaloperonospora parasitica
19021043 19021043 PRJNA680334_S_NODE_37475_length_210_cov_1.988701_g36989_i0 PRJNA680334 37475 210 1.988701 4.1762721 root 1 Root_unresolved Root_unresolved 388 1.24e-103   NTclustered gi|166046794|emb|CU367369.1| 100861 g36989 i0 100 99.9285714285714 210 0 100 0 1 210 409 618 Aphanomyces euteiches cDNA blastn 20985 388 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces euteiches
20295503 20295503 PRJNA680334_S_NODE_101376_length_153_cov_1.666667_g100890_i0 PRJNA680334 101376 153 1.666667 2.55000051 root 1 Root_unresolved Root_unresolved 283 4.0799999999999995e-72   NTclustered gi|166046559|emb|CU367676.1| 100861 g100890 i0 100 8.67320261437908 153 0 100 0 1 153 176 328 Aphanomyces euteiches cDNA blastn 1327 283 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces euteiches
20295639 20295639 PRJNA680334_S_NODE_45596_length_197_cov_5.756098_g45110_i0 PRJNA680334 45596 197 5.756098 11.33951306 root 1 Root_unresolved Root_unresolved 364 1.929999999999999e-96   NTclustered gi|166044531|emb|CU367440.1| 100861 g45110 i0 100 12.7817258883249 197 0 100 0 1 197 2 198 Aphanomyces euteiches cDNA blastn 2518 364 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces euteiches
21052193 21052193 PRJNA680334_S_NODE_35457_length_213_cov_5.238889_g34971_i0 PRJNA680334 35457 213 5.238889 11.15883357 Phytophthora cinnamomi 4785 SAR_Eukaryotes SAR_Eukaryotes 89.8 1.43e-13   NTclustered gi|2795018750|ref|XM_067929461.1| 4785 g34971 i0 87.342 0.793427230046948 79 8 37 2 7 84 117 194 Phytophthora cinnamomi 40S ribosomal protein S28-A (IUM83_05328), partial mRNA blastn 169 89.8 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora cinnamomi
21571427 21571427 PRJNA680334_S_NODE_31257_length_222_cov_2.693122_g30771_i0 PRJNA680334 31257 222 2.693122 5.97873084 root 1 Root_unresolved Root_unresolved 401 1.6999999999999994e-107   NTclustered gi|166046506|emb|CU367623.1| 100861 g30771 i0 99.548 41.0495495495495 221 0 99 1 1 221 638 419 Aphanomyces euteiches cDNA blastn 9113 401 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces euteiches
21571509 21571509 PRJNA680334_S_NODE_56337_length_185_cov_1.342105_g55851_i0 PRJNA680334 56337 185 1.342105 2.48289425 root 1 Root_unresolved Root_unresolved 340 3.0099999999999993e-89   NTclustered gi|166046519|emb|CU367636.1| 100861 g55851 i0 100 94.4378378378378 184 0 99 0 2 185 420 237 Aphanomyces euteiches cDNA blastn 17471 340 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces euteiches
21571591 21571591 PRJNA680334_S_NODE_82277_length_163_cov_6.569231_g81791_i0 PRJNA680334 82277 163 6.569231 10.70784653 root 1 Root_unresolved Root_unresolved 296 5.68e-76   NTclustered gi|166046580|emb|CU367697.1| 100861 g81791 i0 99.39 101.361963190184 164 0 100 1 1 163 363 526 Aphanomyces euteiches cDNA blastn 16522 296 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces euteiches
22327686 22327686 PRJNA680334_S_NODE_73918_length_169_cov_3.625000_g73432_i0 PRJNA680334 73918 169 3.625 6.12625 Plasmopara viticola 143451 SAR_Eukaryotes SAR_Eukaryotes 313 5.859999999999999e-81   NTclustered gi|126565763|gb|EF426546.1| 143451 g73432 i0 100 93.414201183432 169 0 100 0 1 169 36 204 Plasmopara viticola strain UASWS SG1 28S ribosomal RNA gene, complete sequence blastn 15787 313 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Plasmopara Plasmopara viticola
22846831 22846831 PRJNA680334_S_NODE_85518_length_161_cov_6.085938_g85032_i0 PRJNA680334 85518 161 6.085938 9.79836018 root 1 Root_unresolved Root_unresolved 291 2.6e-74   NTclustered gi|166044514|emb|CU367423.1| 100861 g85032 i0 99.379 99.3229813664596 161 0 100 1 1 161 622 463 Aphanomyces euteiches cDNA blastn 15991 291 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces euteiches
24876064 24876064 PRJNA680334_S_NODE_52640_length_189_cov_1.653846_g52154_i0 PRJNA680334 52640 189 1.653846 3.12576894 Phytophthora sojae 67593 SAR_Eukaryotes SAR_Eukaryotes 141 3.3600000000000003e-29   NTclustered gi|695393193|ref|XM_009522251.1| 67593 g52154 i0 82.209 86.2486772486773 163 29 86 0 26 188 1298 1136 Phytophthora sojae hypothetical protein mRNA blastn 16301 141 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora sojae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;