RNAquarium Metadata Server
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contig_metadata

5 rows where bioproject = "PRJNA680334", tax_clade = "Sar" and tax_phylum = "Apicomplexa"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Apicomplexa · 5 ✖

tax_clade 1

bioproject 1

  • PRJNA680334 · 5 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1925309 1925309 PRJNA680334_S_NODE_10962_length_305_cov_14.279412_g10476_i0 PRJNA680334 10962 305 14.279412 43.5522066 Atoxoplasma sp. MS-2003 241650 SAR_Eukaryotes SAR_Eukaryotes 479 1.1e-130   NTclustered gi|37622270|gb|AY331573.1| 241650 g10476 i0 95.082 85.7311475409836 305 13 99 1 1 303 1851 1547 Atoxoplasma sp. MS-2003 isolate 2 from Northern house sparrow small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 26148 479 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Eimeriidae Atoxoplasma Atoxoplasma sp. MS-2003
13404471 13404471 PRJNA680334_S_NODE_82651_length_163_cov_3.615385_g82165_i0 PRJNA680334 82651 163 3.615385 5.89307755 Eimeria nieschulzi 44416 SAR_Eukaryotes SAR_Eukaryotes 52.8 0.014   NTclustered gi|18033279|gb|AF332522.1|AF332522 44416 g82165 i0 90 0.245398773006135 40 4 25 0 2 41 1277 1316 Eimeria nieschulzi 16S ribosomal RNA gene, partial sequence; apicoplast gene for apicoplast product blastn 40 52.8 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Eimeriidae Eimeria Eimeria nieschulzi
22326952 22326952 PRJNA680334_S_NODE_32278_length_219_cov_30.720430_g31792_i0 PRJNA680334 32278 219 30.72043 67.277741700000007 Eimeria tenella 5802 SAR_Eukaryotes SAR_Eukaryotes 361 2.83e-95   NTclustered gi|2792507|gb|AF042107.1| 5802 g31792 i0 99.495 88.9908675799087 198 1 90 0 3 200 844 647 Eimeria tenella ribosomal protein S3a mRNA, complete cds blastn 19489 361 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Eimeriidae Eimeria Eimeria tenella
22327280 22327280 PRJNA680334_S_NODE_51658_length_190_cov_2.191083_g51172_i0 PRJNA680334 51658 190 2.191083 4.1630577 Eimeria acervulina 5801 SAR_Eukaryotes SAR_Eukaryotes 58.4 3.51e-4   NTclustered gi|915001508|ref|XM_013393049.1| 5801 g51172 i0 100 0.163157894736842 31 0 16 0 35 65 1311 1281 Eimeria acervulina hypothetical protein, conserved partial mRNA blastn 31 58.4 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Eimeriidae Eimeria Eimeria acervulina
26923809 26923809 PRJNA680334_S_NODE_24862_length_238_cov_2.839024_g24376_i0 PRJNA680334 24862 238 2.839024 6.75687712 Cryptosporidium hominis TU5 237895 SAR_Eukaryotes SAR_Eukaryotes 63.5 1.44e-9   NR XP_666617.1 353151 g24376 i0 41.7 1.81512605042017 72 41 90.8 1 223 8 214 284 XP_666617.1 ARF GAP-like zinc finger-containing protein (ZIGA2) [Cryptosporidium hominis TU502] diamond 432 63.5 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Cryptosporidiidae Cryptosporidium Cryptosporidium hominis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;