RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA680334" and tax_clade = "Metamonada"

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tax_superkingdom 1

tax_phylum 1

tax_clade 1

  • Metamonada · 2 ✖

bioproject 1

  • PRJNA680334 · 2 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
31440728 31440728 PRJNA680334_S_NODE_28576_length_228_cov_3.307692_g28090_i0 PRJNA680334 28576 228 3.307692 7.54153776 Tritrichomonas foetus 1144522 Parabasalia other_Eukaryota 57 2.92e-7   NR XP_068347844.1 1144522 g28090 i0 53 0.868421052631579 66 31 86.8 0 228 31 360 425 XP_068347844.1 uncharacterized protein TRFO_39111 [Tritrichomonas foetus] diamond 198 57 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Tritrichomonadidae Tritrichomonas Tritrichomonas foetus
32484986 32484986 PRJNA680334_S_NODE_89979_length_159_cov_1.952381_g89493_i0 PRJNA680334 89979 159 1.952381 3.10428579 Tritrichomonas foetus 1144522 Parabasalia other_Eukaryota 41.2 0.0339   NR XP_068353417.1 1144522 g89493 i0 71 0.584905660377358 31 9 58.5 0 98 6 123 153 XP_068353417.1 uncharacterized protein TRFO_33031 [Tritrichomonas foetus] diamond 93 41.2 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Tritrichomonadidae Tritrichomonas Tritrichomonas foetus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;