RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA680334", tax_clade = "FCB group" and tax_phylum = "Ignavibacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Ignavibacteriota · 3 ✖

tax_kingdom 1

tax_clade 1

  • FCB group · 3 ✖

bioproject 1

  • PRJNA680334 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
29987194 29987194 PRJNA680334_S_NODE_67071_length_175_cov_1.183099_g66585_i0 PRJNA680334 67071 175 1.183099 2.07042325 Pyranulibacter aquaticus 3163344 Bacteria Bacteria 77.4 8.88e-15   NR MFA3784090.1 3163344 g66585 i0 58.6 0.994285714285714 58 24 99.4 0 1 174 196 253 MFA3784090.1 hypothetical protein [Melioribacteraceae bacterium 4301-Me] diamond 174 77.4 1 Bacteria FCB group Pseudomonadati Ignavibacteriota Ignavibacteria Ignavibacteriales Melioribacteraceae Pyranulibacter Pyranulibacter aquaticus
30903499 30903499 PRJNA680334_S_NODE_25554_length_236_cov_3.541872_g25068_i0 PRJNA680334 25554 236 3.541872 8.35881792 Ignavibacteriales bacterium 2049428 Bacteria Bacteria 116 1.0599999999999998e-31   NR HOP50744.1 2049428 g25068 i0 100 1.42372881355932 56 0 71.2 0 235 68 62 117 HOP50744.1 MotA/TolQ/ExbB proton channel family protein [Ignavibacteriales bacterium] diamond 336 116 1 Bacteria FCB group Pseudomonadati Ignavibacteriota Ignavibacteria Ignavibacteriales     Ignavibacteriales bacterium
31472587 31472587 PRJNA680334_S_NODE_48436_length_194_cov_1.031056_g47950_i0 PRJNA680334 48436 194 1.031056 2.00024864 Ignavibacterium album 591197 Bacteria Bacteria 110 1.67e-29   NR WP_014558985.1 591197 g47950 i0 79.7 2.96907216494845 64 13 99 0 3 194 28 91 WP_014558985.1 ArsR/SmtB family transcription factor [Ignavibacterium album] diamond 576 110 1 Bacteria FCB group Pseudomonadati Ignavibacteriota Ignavibacteria Ignavibacteriales Ignavibacteriaceae Ignavibacterium Ignavibacterium album

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;