RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA680334", tax_clade = "Discoba" and tax_phylum = "Heterolobosea"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Heterolobosea · 4 ✖

tax_clade 1

  • Discoba · 4 ✖

bioproject 1

  • PRJNA680334 · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
649566 649566 PRJNA680334_S_NODE_37701_length_209_cov_5.909091_g37215_i0 PRJNA680334 37701 209 5.909091 12.35000019 Psalteriomonas lanterna 31290 Heterolobosea other_Eukaryota 117 6.41e-22   NTclustered gi|273161171|gb|GQ924932.1| 31290 g37215 i0 79.641 0.799043062200957 167 30 79 4 34 198 1179 1015 Psalteriomonas lanterna elongation factor 1 alpha (EF-1alpha) mRNA, partial cds; hydrogenosome blastn 167 117 1 Eukaryota Discoba   Heterolobosea     Psalteriomonadidae Psalteriomonas Psalteriomonas lanterna
5754057 5754057 PRJNA680334_S_NODE_81665_length_164_cov_1.969466_g81179_i0 PRJNA680334 81665 164 1.969466 3.22992424 Naegleria gruberi 5762 Heterolobosea other_Eukaryota 281 1.6000000000000001e-71   NTclustered gi|290980313|ref|XM_002672831.1| 5762 g81179 i0 97.561 1 164 4 100 0 1 164 388 225 Naegleria gruberi ribosomal protein L30 (NAEGRDRAFT_81081), mRNA blastn 164 281 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi
12648692 12648692 PRJNA680334_S_NODE_7630_length_340_cov_5.648208_g7144_i0 PRJNA680334 7630 340 5.648208 19.2039072 Naegleria 5761 Heterolobosea other_Eukaryota 606 5.469999999999998e-169   NTclustered gi|2618963742|gb|OR769034.1| 5762 g7144 i0 100 9.77941176470588 328 0 96 0 1 328 5476 5803 Naegleria gruberi strain NEG-M rDNA-containing extrachromosomal element genomic sequence; and 18S small subunit ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S large subunit ribosomal RNA gene, complete sequence blastn 3325 606 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi
31041952 31041952 PRJNA680334_S_NODE_70155_length_172_cov_3.496403_g69669_i0 PRJNA680334 70155 172 3.496403 6.01381316 root 1 Root_unresolved Root_unresolved 73.6 9.71e-14   NR KAL0487522.1 1008807 g69669 i0 70.6 3.75 51 15 89 0 171 19 161 211 KAL0487522.1 pantothenate synthetase [Acrasis kona] diamond 645 73.9 0.995940460081191 Eukaryota Discoba   Heterolobosea     Acrasidae Acrasis Acrasis kona

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;