RNAquarium Metadata Server
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contig_metadata

8 rows where bioproject = "PRJNA680334" and tax_clade = "Amoebozoa"

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tax_phylum 2

analysis 2

tax_superkingdom 1

tax_clade 1

  • Amoebozoa · 8 ✖

bioproject 1

  • PRJNA680334 · 8 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
649350 649350 PRJNA680334_S_NODE_23161_length_243_cov_4.019048_g22675_i0 PRJNA680334 23161 243 4.019048 9.76628664 Dictyostelium discoideum 44689 Evosea other_Eukaryota 62.1 3.64e-5   NTclustered gi|66827724|ref|XM_642125.1| 352472 g22675 i0 97.222 4.23868312757202 36 1 15 0 192 227 203 168 Dictyostelium discoideum AX4 hypothetical protein (DDB_G0268308) mRNA, complete cds blastn 1030 62.1 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium discoideum
5753318 5753318 PRJNA680334_S_NODE_39285_length_206_cov_18.317919_g38799_i0 PRJNA680334 39285 206 18.317919 37.73491314 Protostelium mycophagum 472931 Evosea other_Eukaryota 287 4.53e-73   NTclustered gi|262262901|gb|FJ766444.1| 472931 g38799 i0 92.893 44.495145631068 197 14 96 0 1 197 1241 1437 Protostelium mycophagum strain BRNFDF05-11A-3 small subunit ribosomal RNA gene, partial sequence blastn 9166 287 1 Eukaryota Amoebozoa   Evosea Variosea Protosteliida Protosteliaceae Protostelium Protostelium mycophagum
26923824 26923824 PRJNA680334_S_NODE_91882_length_158_cov_1.672000_g91396_i0 PRJNA680334 91882 158 1.672 2.64176 Planoprotostelium fungivorum 1890364 Evosea other_Eukaryota 63.9 3.7e-10   NR PRP78348.1 1890364 g91396 i0 56.9 1.93670886075949 51 21 96.8 1 5 157 301 350 PRP78348.1 hypothetical protein PROFUN_11388 [Planoprotostelium fungivorum] diamond 306 63.9 1 Eukaryota Amoebozoa   Evosea Variosea Cavosteliida Cavosteliaceae Planoprotostelium Planoprotostelium fungivorum
27492812 27492812 PRJNA680334_S_NODE_81163_length_164_cov_3.290076_g80677_i0 PRJNA680334 81163 164 3.290076 5.39572464 Planoprotostelium fungivorum 1890364 Evosea other_Eukaryota 60.8 5.06e-9   NR PRP81440.1 1890364 g80677 i0 60 0.731707317073171 40 16 73.2 0 164 45 276 315 PRP81440.1 hypothetical protein PROFUN_10970 [Planoprotostelium fungivorum] diamond 120 60.8 1 Eukaryota Amoebozoa   Evosea Variosea Cavosteliida Cavosteliaceae Planoprotostelium Planoprotostelium fungivorum
28092623 28092623 PRJNA680334_S_NODE_92705_length_157_cov_4.032258_g92219_i0 PRJNA680334 92705 157 4.032258 6.33064506 Planoprotostelium fungivorum 1890364 Evosea other_Eukaryota 48.9 7.74e-5   NR PRP76068.1 1890364 g92219 i0 57.4 0.898089171974522 47 9 74.5 2 129 13 390 433 PRP76068.1 hypothetical protein PROFUN_01784 [Planoprotostelium fungivorum] diamond 141 48.9 1 Eukaryota Amoebozoa   Evosea Variosea Cavosteliida Cavosteliaceae Planoprotostelium Planoprotostelium fungivorum
28250362 28250362 PRJNA680334_S_NODE_36306_length_212_cov_2.262570_g35820_i0 PRJNA680334 36306 212 2.26257 4.7966484 Polysphondylium violaceum 133409 Evosea other_Eukaryota 92 7.72e-20   NR KAF2070540.1 133409 g35820 i0 57.6 0.933962264150943 66 28 93.4 0 12 209 293 358 KAF2070540.1 hypothetical protein CYY_008145 [Polysphondylium violaceum] diamond 198 92 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Polysphondylium Polysphondylium violaceum
29860792 29860792 PRJNA680334_S_NODE_29771_length_225_cov_4.994792_g29285_i0 PRJNA680334 29771 225 4.994792 11.238282 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 48.9 1.83e-4   NR XP_004337111.1 1257118 g29285 i0 42.9 2.21333333333333 56 28 69.3 2 198 43 224 279 XP_004337111.1 uncharacterized protein ACA1_215700 [Acanthamoeba castellanii str. Neff] diamond 498 48.9 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
31061687 31061687 PRJNA680334_S_NODE_79775_length_165_cov_3.053030_g79289_i0 PRJNA680334 79775 165 3.05303 5.0374995 Planoprotostelium fungivorum 1890364 Evosea other_Eukaryota 44.7 0.00262   NR PRP88923.1 1890364 g79289 i0 52.5 0.727272727272727 40 19 72.7 0 2 121 262 301 PRP88923.1 pantothenate synthetase [Planoprotostelium fungivorum] diamond 120 44.7 1 Eukaryota Amoebozoa   Evosea Variosea Cavosteliida Cavosteliaceae Planoprotostelium Planoprotostelium fungivorum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;