RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA675638", tax_phylum = "Spirochaetota" and tax_superkingdom = "Bacteria"

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tax_superkingdom 1

  • Bacteria · 3 ✖

tax_phylum 1

  • Spirochaetota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA675638 · 3 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
17226620 17226620 PRJNA675638_P_NODE_8394_length_239_cov_1.342105_g8197_i0 PRJNA675638 8394 239 1.342105 3.20763095 Spirochaetota bacterium 2202144 Bacteria Bacteria 102 3.38e-23   NR TXG86104.1 2202144 g8197 i0 58.2 0.99163179916318 79 33 99.2 0 2 238 187 265 TXG86104.1 MAG: hypothetical protein E6R13_01070 [Spirochaetota bacterium] diamond 237 102 1 Bacteria   Pseudomonadati Spirochaetota         Spirochaetota bacterium
30555678 30555678 PRJNA675638_P_NODE_16093_length_179_cov_1.176923_g15896_i0 PRJNA675638 16093 179 1.176923 2.10669217 Spirochaetota bacterium 2202144 Bacteria Bacteria 58.2 5.71e-8   NR TXG80707.1 2202144 g15896 i0 53.6 0.93854748603352 56 25 92.2 1 179 15 389 444 TXG80707.1 MAG: hypothetical protein E6R13_07705 [Spirochaetota bacterium] diamond 168 58.2 1 Bacteria   Pseudomonadati Spirochaetota         Spirochaetota bacterium
32894369 32894369 PRJNA675638_P_NODE_5120_length_299_cov_1.632000_g4923_i0 PRJNA675638 5120 299 1.632 4.87968 Spirochaetota bacterium 2202144 Bacteria Bacteria 50.1 1.5e-4   NR TXG81208.1 2202144 g4923 i0 47.9 0.481605351170569 48 25 48.2 0 167 24 3 50 TXG81208.1 MAG: hypothetical protein E6R13_06675 [Spirochaetota bacterium] diamond 144 50.1 1 Bacteria   Pseudomonadati Spirochaetota         Spirochaetota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;