RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA675638", tax_phylum = "Myxococcota" and tax_superkingdom = "Bacteria"

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tax_superkingdom 1

  • Bacteria · 3 ✖

tax_phylum 1

  • Myxococcota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA675638 · 3 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28072769 28072769 PRJNA675638_P_NODE_8925_length_233_cov_1.108696_g8728_i0 PRJNA675638 8925 233 1.108696 2.58326168 root 1 Root_unresolved Root_unresolved 46.2 0.00198   NR MCA9773584.1 2026763 g8728 i0 43.1 2.71673819742489 65 34 82.4 2 37 228 213 275 MCA9773584.1 hypothetical protein [Myxococcales bacterium] diamond 633 46.6 0.991416309012876 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales     Myxococcales bacterium
28155959 28155959 PRJNA675638_P_NODE_21025_length_163_cov_0.894737_g20828_i0 PRJNA675638 21025 163 0.894737 1.45842131 Deltaproteobacteria bacterium 2026735 Bacteria Bacteria 41.2 0.0314   NR MBW1906178.1 2026735 g20828 i0 35.3 0.938650306748466 51 31 90.2 1 17 163 66 116 MBW1906178.1 3-isopropylmalate dehydratase [Deltaproteobacteria bacterium] diamond 153 41.2 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
32389860 32389860 PRJNA675638_P_NODE_18759_length_166_cov_0.871795_g18562_i0 PRJNA675638 18759 166 0.871795 1.4471797 Kofleriaceae bacterium 2212474 Bacteria Bacteria 42.4 0.0185   NR HVK78102.1 2212474 g18562 i0 37 0.831325301204819 46 29 83.1 0 23 160 391 436 HVK78102.1 hypothetical protein [Kofleriaceae bacterium] diamond 138 42.4 1 Bacteria   Pseudomonadati Myxococcota   Haliangiales Kofleriaceae   Kofleriaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;