RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA675638", tax_phylum = "Bdellovibrionota" and tax_superkingdom = "Bacteria"

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tax_superkingdom 1

  • Bacteria · 3 ✖

tax_phylum 1

  • Bdellovibrionota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA675638 · 3 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27239896 27239896 PRJNA675638_P_NODE_3863_length_339_cov_1.231034_g3666_i0 PRJNA675638 3863 339 1.231034 4.17320526 Silvanigrellaceae bacterium 2654442 Bacteria Bacteria 57 9.19e-7   NR MBX9839916.1 2654442 g3666 i0 39.3 0.787610619469027 89 46 74.3 3 10 261 80 165 MBX9839916.1 MYG1 family protein [Silvanigrellaceae bacterium] diamond 267 57 1 Bacteria   Pseudomonadati Bdellovibrionota Oligoflexia Silvanigrellales Silvanigrellaceae   Silvanigrellaceae bacterium
28755675 28755675 PRJNA675638_P_NODE_2447_length_427_cov_2.441799_g2250_i0 PRJNA675638 2447 427 2.441799 10.42648173 Silvanigrellaceae bacterium 2654442 Bacteria Bacteria 61.2 6.53e-8   NR MBX9839916.1 2654442 g2250 i0 36.6 0.576112412177986 82 50 56.2 1 410 171 213 294 MBX9839916.1 MYG1 family protein [Silvanigrellaceae bacterium] diamond 246 61.2 1 Bacteria   Pseudomonadati Bdellovibrionota Oligoflexia Silvanigrellales Silvanigrellaceae   Silvanigrellaceae bacterium
29134812 29134812 PRJNA675638_P_NODE_5529_length_289_cov_1.275000_g5332_i0 PRJNA675638 5529 289 1.275 3.68475 Pseudobdellovibrionaceae bacterium 2026715 Bacteria Bacteria 51.2 9.11e-6   NR MBL7544301.1 2026715 g5332 i0 55 1.28719723183391 40 18 41.5 0 23 142 2 41 MBL7544301.1 DUF3307 domain-containing protein [Pseudobdellovibrionaceae bacterium] diamond 372 51.2 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae   Pseudobdellovibrionaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;