RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA675638" and tax_phylum = "Acidobacteriota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Acidobacteriota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJNA675638 · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9577158 9577158 PRJNA675638_S_NODE_5108_length_199_cov_2.040000_g5046_i0 PRJNA675638 5108 199 2.04 4.0596 Luteitalea sp. TBR-22 2802971 Bacteria Bacteria 340 3.2899999999999996e-89   NTclustered gi|2131947417|dbj|AP024452.2| 2802971 g5046 i0 97.487 434.040201005025 199 5 100 0 1 199 642204 642006 Vicinamibacteria bacterium TBR-22 DNA, complete genome blastn 86374 340 1 Bacteria   Pseudomonadati Acidobacteriota Vicinamibacteria Vicinamibacterales Vicinamibacteraceae Luteitalea Luteitalea sp. TBR-22
27208134 27208134 PRJNA675638_S_NODE_2262_length_288_cov_0.824268_g2200_i0 PRJNA675638 2262 288 0.824268 2.37389184 Acidobacteriota bacterium 1978231 Bacteria Bacteria 43.1 0.0433   NR MDA1313252.1 1978231 g2200 i0 33.8 0.708333333333333 68 35 68.8 3 87 284 299 358 MDA1313252.1 glycosyltransferase [Acidobacteriota bacterium] diamond 204 43.1 1 Bacteria   Pseudomonadati Acidobacteriota         Acidobacteriota bacterium
28661051 28661051 PRJNA675638_S_NODE_6907_length_174_cov_0.824000_g6845_i0 PRJNA675638 6907 174 0.824 1.43376 Candidatus Acidiferrum sp. 3069120 Bacteria Bacteria 41.6 0.00808   NR HEY2544549.1 3069120 g6845 i0 41.5 0.706896551724138 41 24 70.7 0 29 151 40 80 HEY2544549.1 hypothetical protein [Candidatus Acidiferrum sp.] diamond 123 41.6 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Candidatus Acidiferrales   Candidatus Acidiferrum Candidatus Acidiferrum sp.
31662015 31662015 PRJNA675638_S_NODE_8617_length_163_cov_2.263158_g8555_i0 PRJNA675638 8617 163 2.263158 3.68894754 Thermoanaerobaculia bacterium 2651171 Bacteria Bacteria 42.7 0.0123   NR HYO14880.1 2651171 g8555 i0 47.8 0.846625766871166 46 20 77.3 2 36 161 361 406 HYO14880.1 MMPL family transporter [Thermoanaerobaculia bacterium] diamond 138 42.7 1 Bacteria   Pseudomonadati Acidobacteriota Thermoanaerobaculia       Thermoanaerobaculia bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;